Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00230 * 2 1 4 4 C 1.50700 * 109.47122 * 179.97438 * 3 2 1 5 5 S 1.70450 * 124.59651 * 269.69792 * 4 3 2 6 6 C 1.75498 * 92.45576 * 180.26563 * 5 4 3 7 7 C 1.32741 * 110.59757 * 0.02562 * 6 5 4 8 8 C 1.36105 * 124.59762 * 90.00212 * 4 3 2 9 9 C 1.47035 * 123.47238 * 359.71262 * 8 4 3 10 10 O 1.21555 * 119.99999 * 359.97438 * 9 8 4 11 11 O 1.34794 * 119.99650 * 180.02562 * 9 8 4 12 12 C 1.45207 * 116.99756 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46922 * 330.00376 * 12 11 9 14 14 C 1.53001 * 109.47117 * 90.00094 * 12 11 9 15 15 C 1.50698 * 109.47086 * 209.99815 * 12 11 9 16 16 H 1.07998 * 120.00192 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99823 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99756 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00105 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47151 * 89.99437 * 19 17 15 21 21 H 1.48506 * 109.47043 * 209.99768 * 19 17 15 22 22 H 1.48499 * 109.46932 * 329.99602 * 19 17 15 23 23 H 1.09007 * 109.47171 * 59.99681 * 1 2 3 24 24 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47277 * 300.00142 * 1 2 3 26 26 H 1.09003 * 109.47288 * 60.00133 * 3 2 1 27 27 H 1.08994 * 109.47129 * 300.00401 * 3 2 1 28 28 H 1.08000 * 124.70399 * 180.02562 * 6 5 4 29 29 H 1.08004 * 123.45233 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.46914 * 300.00037 * 14 12 11 31 31 H 1.08997 * 109.46998 * 59.99851 * 14 12 11 32 32 H 1.08990 * 109.47273 * 179.97438 * 14 12 11 33 33 H 0.96997 * 119.99778 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 16 4.4773 1.1175 1.4041 6 6 5.9593 1.0032 0.4711 7 6 5.6947 1.0200 -0.8296 8 6 4.2834 1.1251 -1.1194 9 6 3.7361 1.1622 -2.4836 10 8 2.5359 1.2513 -2.6547 11 8 4.5651 1.0963 -3.5444 12 6 3.9550 1.1376 -4.8614 13 1 2.9590 0.6974 -4.8143 14 6 3.8489 2.5906 -5.3289 15 6 4.8035 0.3582 -5.8327 16 1 5.7103 -0.1208 -5.4941 17 6 4.4215 0.2556 -7.1536 18 7 5.1617 -0.4251 -8.0012 19 14 2.8527 1.0834 -7.7392 20 1 3.1609 2.4630 -8.1937 21 1 2.2750 0.3082 -8.8665 22 1 1.8749 1.1369 -6.6228 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 6.9494 0.9293 0.8961 29 1 6.4565 0.9602 -1.5929 30 1 3.2352 3.1544 -4.6263 31 1 4.8449 3.0308 -5.3758 32 1 3.3913 2.6216 -6.3176 33 1 4.8932 -0.4969 -8.9304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -91.646375 kcal Electronic energy + Delta-G solvation = -18521.720140 eV Core-core repulsion = 15447.098917 eV Total energy + Delta-G solvation = -3074.621223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87594 -38.03083 -36.90965 -35.72844 -33.16984 -31.18308 -30.65369 -27.48595 -26.00094 -25.24029 -23.76132 -21.92100 -20.70249 -19.17186 -17.64412 -16.95736 -16.48904 -16.29563 -15.93321 -15.45419 -15.24746 -14.76285 -14.52814 -13.80274 -13.17228 -13.04669 -12.85085 -12.61457 -12.30975 -12.21496 -11.90956 -11.74133 -11.54245 -11.41144 -11.06864 -10.88815 -10.22754 -10.09581 -9.76566 -9.69770 -9.38587 -9.11701 -8.98712 -8.68438 -8.46649 -6.21879 -4.23990 0.64429 1.41809 1.82575 2.03833 3.18629 3.31068 3.33279 3.45293 3.60679 3.93276 4.27144 4.68242 4.90005 5.01064 5.09349 5.28599 5.40344 5.43680 5.52937 5.66307 5.67225 5.95807 6.03244 6.17784 6.28958 6.29956 6.42347 6.61196 7.02649 7.08687 7.35901 7.51376 8.23448 8.60159 8.85417 9.35177 10.90303 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023326 B = 0.005508 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.070022 B = 5082.304080 C = 5881.597613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.123 3.877 4 C -0.156 4.156 5 S 0.189 5.811 6 C -0.237 4.237 7 C -0.086 4.086 8 C -0.120 4.120 9 C 0.518 3.482 10 O -0.514 6.514 11 O -0.333 6.333 12 C 0.192 3.808 13 H 0.047 0.953 14 C -0.169 4.169 15 C -0.524 4.524 16 H 0.087 0.913 17 C 0.080 3.920 18 N -0.888 5.888 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.262 1.262 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 4.900 18.996 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C 0.045 3.955 4 C -0.275 4.275 5 S 0.456 5.544 6 C -0.371 4.371 7 C -0.114 4.114 8 C -0.137 4.137 9 C 0.361 3.639 10 O -0.406 6.406 11 O -0.249 6.249 12 C 0.138 3.862 13 H 0.065 0.935 14 C -0.227 4.227 15 C -0.561 4.561 16 H 0.105 0.895 17 C -0.123 4.123 18 N -0.525 5.525 19 Si 0.708 3.292 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.187 1.187 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.189 0.811 29 H 0.180 0.820 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.259 4.714 20.249 21.223 hybrid contribution -0.688 0.600 -2.150 2.336 sum -4.947 5.313 18.099 19.501 Atomic orbital electron populations 1.22731 0.80642 1.02845 1.00019 1.87931 1.19862 1.26466 1.95459 1.20992 0.85883 0.86296 1.02346 1.24152 0.99998 1.05971 0.97380 1.82830 0.95374 1.69364 1.06856 1.25469 1.02216 1.12300 0.97161 1.21412 0.94772 0.98765 0.96458 1.19622 0.93359 1.09405 0.91315 1.20310 0.84854 0.73154 0.85612 1.90720 1.16307 1.46782 1.86762 1.86594 1.40353 1.81624 1.16300 1.20943 0.95805 0.93676 0.75794 0.93547 1.22523 1.01526 0.98599 1.00021 1.20777 1.10552 1.32693 0.92127 0.89454 1.24722 0.96735 0.94878 0.96001 1.69836 1.38063 1.40357 1.04276 0.86972 0.84201 0.79132 0.78881 1.20009 1.21677 1.18713 0.93473 0.89517 0.94354 0.92661 0.88589 0.81082 0.82017 0.94437 0.91748 0.92532 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.91 10.69 -35.23 -0.38 -6.28 16 3 C 0.12 1.77 5.64 36.01 0.20 1.97 16 4 C -0.16 -2.33 5.98 -35.08 -0.21 -2.54 16 5 S 0.19 2.09 22.97 -107.50 -2.47 -0.38 16 6 C -0.24 -2.66 11.12 28.85 0.32 -2.34 16 7 C -0.09 -1.24 10.13 -39.01 -0.40 -1.63 16 8 C -0.12 -2.08 5.98 -104.65 -0.63 -2.71 16 9 C 0.52 11.03 7.90 34.30 0.27 11.30 16 10 O -0.51 -11.65 13.33 -19.31 -0.26 -11.91 16 11 O -0.33 -7.85 9.59 -40.75 -0.39 -8.24 16 12 C 0.19 4.92 2.16 -27.88 -0.06 4.86 16 13 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 14 C -0.17 -3.90 9.03 37.16 0.34 -3.56 16 15 C -0.52 -15.17 9.48 -34.44 -0.33 -15.49 16 16 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 17 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 18 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 19 Si 0.88 21.80 24.37 -169.99 -4.14 17.66 16 20 H -0.27 -6.48 6.87 56.52 0.39 -6.09 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 23 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.55 5.96 -51.93 -0.31 1.24 16 28 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.16 2.26 8.06 -52.48 -0.42 1.84 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -32.67 296.06 -5.66 -38.34 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.79 Total: -1.13 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.53 Total: -6.42 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.02 Total: -26.44 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.47 Total: -0.38 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.67 -5.66 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.311 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds