Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00230 * 2 1 4 4 C 1.50700 * 109.47122 * 179.97438 * 3 2 1 5 5 S 1.70450 * 124.59651 * 269.69792 * 4 3 2 6 6 C 1.75498 * 92.45576 * 180.26563 * 5 4 3 7 7 C 1.32741 * 110.59757 * 0.02562 * 6 5 4 8 8 C 1.36105 * 124.59762 * 90.00212 * 4 3 2 9 9 C 1.47035 * 123.47238 * 359.71262 * 8 4 3 10 10 O 1.21555 * 119.99999 * 359.97438 * 9 8 4 11 11 O 1.34794 * 119.99650 * 180.02562 * 9 8 4 12 12 C 1.45207 * 116.99756 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46922 * 330.00376 * 12 11 9 14 14 C 1.53001 * 109.47117 * 90.00094 * 12 11 9 15 15 C 1.50698 * 109.47086 * 209.99815 * 12 11 9 16 16 H 1.07998 * 120.00192 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99823 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99756 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00105 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47151 * 89.99437 * 19 17 15 21 21 H 1.48506 * 109.47043 * 209.99768 * 19 17 15 22 22 H 1.48499 * 109.46932 * 329.99602 * 19 17 15 23 23 H 1.09007 * 109.47171 * 59.99681 * 1 2 3 24 24 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47277 * 300.00142 * 1 2 3 26 26 H 1.09003 * 109.47288 * 60.00133 * 3 2 1 27 27 H 1.08994 * 109.47129 * 300.00401 * 3 2 1 28 28 H 1.08000 * 124.70399 * 180.02562 * 6 5 4 29 29 H 1.08004 * 123.45233 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.46914 * 300.00037 * 14 12 11 31 31 H 1.08997 * 109.46998 * 59.99851 * 14 12 11 32 32 H 1.08990 * 109.47273 * 179.97438 * 14 12 11 33 33 H 0.96997 * 119.99778 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 16 4.4773 1.1175 1.4041 6 6 5.9593 1.0032 0.4711 7 6 5.6947 1.0200 -0.8296 8 6 4.2834 1.1251 -1.1194 9 6 3.7361 1.1622 -2.4836 10 8 2.5359 1.2513 -2.6547 11 8 4.5651 1.0963 -3.5444 12 6 3.9550 1.1376 -4.8614 13 1 2.9590 0.6974 -4.8143 14 6 3.8489 2.5906 -5.3289 15 6 4.8035 0.3582 -5.8327 16 1 5.7103 -0.1208 -5.4941 17 6 4.4215 0.2556 -7.1536 18 7 5.1617 -0.4251 -8.0012 19 14 2.8527 1.0834 -7.7392 20 1 3.1609 2.4630 -8.1937 21 1 2.2750 0.3082 -8.8665 22 1 1.8749 1.1369 -6.6228 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 6.9494 0.9293 0.8961 29 1 6.4565 0.9602 -1.5929 30 1 3.2352 3.1544 -4.6263 31 1 4.8449 3.0308 -5.3758 32 1 3.3913 2.6216 -6.3176 33 1 4.8932 -0.4969 -8.9304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -113.921781 kcal Electronic energy + Delta-G solvation = -18522.686074 eV Core-core repulsion = 15447.098917 eV Total energy + Delta-G solvation = -3075.587157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.48293 -39.25715 -38.10548 -37.39915 -35.29326 -32.70412 -32.24260 -28.62602 -27.39726 -27.04213 -25.04937 -23.34621 -22.32056 -20.72262 -19.00771 -18.76509 -18.00120 -17.60286 -17.40162 -16.92210 -16.58470 -16.43745 -15.62302 -15.25104 -14.93206 -14.50368 -14.31483 -14.09869 -13.95122 -13.59667 -13.44282 -13.26209 -12.88542 -12.83483 -12.40085 -12.25713 -12.10505 -11.74522 -11.69662 -11.39000 -11.25038 -10.85225 -10.60335 -10.02811 -9.45690 -8.46250 -6.55226 -0.51736 0.41473 0.81521 0.83356 1.21577 1.29493 1.39238 1.98806 2.02866 2.18254 2.86097 2.89124 3.64010 3.74221 3.88958 4.18420 4.25978 4.37456 4.39699 4.46250 4.48006 4.52052 4.59978 4.69382 4.79849 4.91136 5.04463 5.17019 5.21863 5.31352 5.59369 6.07470 6.12012 6.48061 6.83929 7.09424 8.69852 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023326 B = 0.005508 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.070022 B = 5082.304080 C = 5881.597613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.119 3.881 4 C -0.173 4.173 5 S 0.289 5.711 6 C -0.220 4.220 7 C -0.113 4.113 8 C -0.160 4.160 9 C 0.511 3.489 10 O -0.537 6.537 11 O -0.347 6.347 12 C 0.194 3.806 13 H 0.029 0.971 14 C -0.162 4.162 15 C -0.540 4.540 16 H 0.046 0.954 17 C 0.031 3.969 18 N -0.929 5.929 19 Si 0.941 3.059 20 H -0.248 1.248 21 H -0.281 1.281 22 H -0.259 1.259 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.211 0.789 29 H 0.154 0.846 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 6.126 21.578 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.042 3.958 4 C -0.293 4.293 5 S 0.556 5.444 6 C -0.355 4.355 7 C -0.141 4.141 8 C -0.177 4.177 9 C 0.356 3.644 10 O -0.430 6.430 11 O -0.263 6.263 12 C 0.140 3.860 13 H 0.047 0.953 14 C -0.219 4.219 15 C -0.578 4.578 16 H 0.065 0.935 17 C -0.168 4.168 18 N -0.567 5.567 19 Si 0.765 3.235 20 H -0.173 1.173 21 H -0.208 1.208 22 H -0.184 1.184 23 H 0.054 0.946 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.228 0.772 29 H 0.171 0.829 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.970 5.949 22.856 24.135 hybrid contribution -0.414 0.136 -2.733 2.768 sum -5.384 6.085 20.123 21.701 Atomic orbital electron populations 1.22931 0.78918 1.03978 1.00929 1.87877 1.21909 1.27233 1.95652 1.21049 0.85807 0.86071 1.02902 1.24567 1.00945 1.04895 0.98921 1.82504 0.92945 1.65855 1.03046 1.25957 1.04485 1.08957 0.96075 1.21324 0.93384 1.01421 0.97934 1.19582 0.95165 1.13563 0.89429 1.21085 0.84617 0.72235 0.86463 1.90692 1.17049 1.48061 1.87174 1.86580 1.41027 1.82436 1.16237 1.20649 0.93979 0.94839 0.76553 0.95329 1.22397 1.02432 0.96709 1.00369 1.20928 1.09805 1.33511 0.93543 0.93549 1.25556 1.00175 0.95270 0.95841 1.69955 1.40131 1.41640 1.04975 0.85979 0.79680 0.79307 0.78496 1.17332 1.20778 1.18406 0.94603 0.88376 0.91342 0.88979 0.91188 0.77244 0.82877 0.92477 0.91056 0.92419 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -12.35 10.69 -148.98 -1.59 -13.95 16 3 C 0.12 3.31 5.64 71.24 0.40 3.71 16 4 C -0.17 -4.94 5.98 25.19 0.15 -4.79 16 5 S 0.29 5.25 22.97 -56.49 -1.30 3.96 16 6 C -0.22 -4.23 11.12 66.65 0.74 -3.49 16 7 C -0.11 -3.20 10.13 22.68 0.23 -2.97 16 8 C -0.16 -5.57 5.98 -19.88 -0.12 -5.69 16 9 C 0.51 22.60 7.90 70.13 0.55 23.15 16 10 O -0.54 -25.23 13.33 19.66 0.26 -24.96 16 11 O -0.35 -17.11 9.59 -57.06 -0.55 -17.65 16 12 C 0.19 10.27 2.16 29.85 0.06 10.33 16 13 H 0.03 1.61 6.22 -2.39 -0.01 1.59 16 14 C -0.16 -7.40 9.03 71.98 0.65 -6.75 16 15 C -0.54 -32.67 9.48 25.60 0.24 -32.43 16 16 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 17 C 0.03 1.86 5.45 84.66 0.46 2.32 16 18 N -0.93 -57.63 13.96 21.45 0.30 -57.33 16 19 Si 0.94 44.96 24.37 68.60 1.67 46.63 16 20 H -0.25 -10.86 6.87 99.48 0.68 -10.18 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 23 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 2.29 5.96 -2.39 -0.01 2.28 16 28 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.06 2.59 3.27 -2.39 -0.01 2.59 16 33 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -74.38 296.06 4.47 -69.91 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.05 Total: 8.12 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.62 Total: -14.72 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.30 Total: -57.33 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -1.88 Total: -56.57 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.30 Total: 3.96 kcal Total: -74.38 4.47 -69.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.013 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds