Wall clock time and date at job start Mon Mar 30 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47221 * 2 1 4 4 H 1.09003 * 109.47569 * 305.57896 * 3 2 1 5 5 C 1.50707 * 109.47036 * 185.58245 * 3 2 1 6 6 H 1.07994 * 119.99731 * 266.06632 * 5 3 2 7 7 C 1.37874 * 120.00141 * 86.34449 * 5 3 2 8 8 N 1.31513 * 120.00262 * 185.64227 * 7 5 3 9 9 Si 1.86800 * 119.99894 * 5.63814 * 7 5 3 10 10 H 1.48508 * 109.47394 * 84.62569 * 9 7 5 11 11 H 1.48497 * 109.47414 * 204.62571 * 9 7 5 12 12 H 1.48506 * 109.47291 * 324.62744 * 9 7 5 13 13 O 1.45204 * 109.47204 * 65.58445 * 3 2 1 14 14 C 1.34775 * 116.99656 * 269.99611 * 13 3 2 15 15 O 1.21537 * 120.00226 * 0.02562 * 14 13 3 16 16 C 1.47235 * 119.99709 * 179.97438 * 14 13 3 17 17 C 1.36408 * 127.15719 * 359.68930 * 16 14 13 18 18 O 1.33920 * 108.55632 * 179.86843 * 17 16 14 19 19 C 1.34315 * 110.91576 * 0.41395 * 18 17 16 20 20 S 1.76204 * 125.52221 * 179.76934 * 19 18 17 21 21 C 1.81397 * 102.99605 * 359.97228 * 20 19 18 22 22 C 1.35107 * 108.96196 * 359.74597 * 19 18 17 23 23 H 1.09001 * 109.47186 * 300.00083 * 1 2 3 24 24 H 1.09005 * 109.46929 * 59.99818 * 1 2 3 25 25 H 1.08992 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47186 * 239.99917 * 2 1 3 27 27 H 1.09005 * 109.46929 * 120.00182 * 2 1 3 28 28 H 0.97002 * 120.00041 * 180.02562 * 8 7 5 29 29 H 1.08002 * 125.72730 * 359.97438 * 17 16 14 30 30 H 1.08994 * 109.47309 * 299.99855 * 21 20 19 31 31 H 1.08998 * 109.47328 * 60.00699 * 21 20 19 32 32 H 1.09003 * 109.47165 * 179.97438 * 21 20 19 33 33 H 1.08005 * 127.06330 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9844 -0.8358 5 6 3.5407 1.4446 -0.1382 6 1 4.1641 1.4793 0.7430 7 6 4.1178 1.4082 -1.3898 8 7 5.4229 1.2981 -1.5093 9 14 3.0460 1.5151 -2.9160 10 1 2.7734 2.9406 -3.2307 11 1 3.7491 0.8813 -4.0601 12 1 1.7631 0.8084 -2.6704 13 8 1.6679 2.0874 1.2466 14 6 0.4802 2.7238 1.2754 15 8 -0.2254 2.7388 0.2859 16 6 0.0369 3.3998 2.5060 17 6 0.7035 3.4686 3.6941 18 8 -0.0367 4.1754 4.5577 19 6 -1.1853 4.5764 3.9887 20 16 -2.4433 5.5239 4.7790 21 6 -1.7785 5.7726 6.4483 22 6 -1.2198 4.1361 2.7118 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8289 1.2728 -2.3899 29 1 1.6675 3.0285 3.9028 30 1 -1.6212 4.8050 6.9247 31 1 -0.8297 6.3055 6.3859 32 1 -2.4850 6.3575 7.0374 33 1 -2.0084 4.2922 1.9905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870310174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:31 Heat of formation + Delta-G solvation = -76.352274 kcal Electronic energy + Delta-G solvation = -18286.700795 eV Core-core repulsion = 15212.742774 eV Total energy + Delta-G solvation = -3073.958021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.52416 -39.50596 -35.90501 -33.51831 -32.85606 -31.94391 -30.12692 -29.29126 -27.82673 -24.29898 -22.77903 -21.86092 -20.78566 -19.73518 -18.64555 -16.99646 -16.58637 -16.44323 -16.11904 -15.50554 -15.28639 -14.60206 -14.17133 -13.93349 -13.67243 -13.32466 -12.94677 -12.80371 -12.41855 -12.28446 -12.04423 -11.66105 -11.38346 -11.08570 -11.01911 -10.82641 -10.23498 -10.14216 -10.02569 -9.79740 -9.56397 -9.45336 -9.07821 -8.70110 -7.63794 -6.28090 -4.31500 0.93244 1.31035 1.61601 1.82715 3.14930 3.22964 3.29395 3.35225 3.53520 3.66685 4.26306 4.69666 4.73243 4.74432 4.93982 5.04110 5.31641 5.40203 5.66729 5.81474 5.91141 5.98526 6.04747 6.18651 6.43043 6.63115 6.70089 6.79846 6.81826 7.15498 7.33438 7.50245 8.21867 8.60382 8.81303 9.30765 10.83289 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035560 B = 0.004246 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.202256 B = 6592.898996 C = 6814.638158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.194 3.806 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.086 0.914 7 C 0.084 3.916 8 N -0.883 5.883 9 Si 0.865 3.135 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.257 1.257 13 O -0.343 6.343 14 C 0.524 3.476 15 O -0.513 6.513 16 C -0.203 4.203 17 C 0.054 3.946 18 O -0.174 6.174 19 C -0.043 4.043 20 S -0.025 6.025 21 C -0.151 4.151 22 C -0.122 4.122 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.270 0.730 29 H 0.228 0.772 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 6.245 13.670 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.141 3.859 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.104 0.896 7 C -0.121 4.121 8 N -0.520 5.520 9 Si 0.690 3.310 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.181 1.181 13 O -0.259 6.259 14 C 0.368 3.632 15 O -0.404 6.404 16 C -0.207 4.207 17 C -0.019 4.019 18 O -0.071 6.071 19 C -0.201 4.201 20 S 0.212 5.788 21 C -0.320 4.320 22 C -0.150 4.150 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.244 0.756 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.327 6.714 13.191 20.600 hybrid contribution 0.757 -0.466 -0.712 1.139 sum -13.570 6.248 12.479 19.466 Atomic orbital electron populations 1.21931 0.97444 0.99833 1.01621 1.22168 0.93672 0.98932 1.02434 1.20997 0.96167 0.88659 0.80085 0.93597 1.20766 0.87684 1.52519 0.95012 0.89619 1.24816 0.94950 0.93753 0.98546 1.69850 1.09520 1.48076 1.24511 0.87051 0.81458 0.79606 0.82856 1.19572 1.20715 1.18083 1.86641 1.33465 1.62561 1.43235 1.19898 0.80801 0.76318 0.86145 1.90785 1.55156 1.58915 1.35594 1.20771 0.97401 1.08122 0.94428 1.24878 0.96592 0.93306 0.87165 1.83952 1.26241 1.56261 1.40641 1.23924 0.91492 1.08379 0.96354 1.85753 1.19554 1.63622 1.09887 1.23619 1.05853 1.06514 0.95990 1.22451 0.97963 0.99979 0.94561 0.93807 0.92735 0.94048 0.90982 0.91837 0.91980 0.75602 0.89264 0.89235 0.87098 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.57 37.16 0.32 -2.68 16 2 C -0.13 -2.97 5.30 -26.73 -0.14 -3.11 16 3 C 0.19 4.82 1.80 -27.88 -0.05 4.77 16 4 H 0.05 1.21 4.83 -51.93 -0.25 0.95 16 5 C -0.52 -14.66 9.24 -34.44 -0.32 -14.97 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 8 N -0.88 -26.13 13.96 55.43 0.77 -25.35 16 9 Si 0.86 21.26 26.27 -169.99 -4.47 16.80 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.26 -6.10 6.29 56.52 0.36 -5.75 16 13 O -0.34 -7.78 9.66 -40.69 -0.39 -8.17 16 14 C 0.52 10.91 6.43 34.39 0.22 11.13 16 15 O -0.51 -11.74 14.17 -19.29 -0.27 -12.01 16 16 C -0.20 -3.42 6.31 -103.31 -0.65 -4.07 16 17 C 0.05 0.73 11.93 30.07 0.36 1.09 16 18 O -0.17 -2.23 10.19 6.70 0.07 -2.16 16 19 C -0.04 -0.56 7.32 29.62 0.22 -0.34 16 20 S -0.02 -0.24 22.74 -107.50 -2.44 -2.68 16 21 C -0.15 -0.98 10.45 101.05 1.06 0.08 16 22 C -0.12 -1.82 10.97 -37.10 -0.41 -2.22 16 23 H 0.04 0.86 6.05 -51.93 -0.31 0.55 16 24 H 0.05 1.13 7.82 -51.93 -0.41 0.72 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.61 6.99 -51.93 -0.36 1.25 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.23 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.17 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -31.65 300.15 -5.60 -37.25 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.90 Total: -0.12 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.50 Total: -8.06 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.77 Total: -25.35 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.60 Total: -22.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.47 Total: 16.80 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.44 Total: -2.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.65 -5.60 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.104 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds