Wall clock time and date at job start Mon Mar 30 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47221 * 2 1 4 4 H 1.09003 * 109.47569 * 305.57896 * 3 2 1 5 5 C 1.50707 * 109.47036 * 185.58245 * 3 2 1 6 6 H 1.07994 * 119.99731 * 266.06632 * 5 3 2 7 7 C 1.37874 * 120.00141 * 86.34449 * 5 3 2 8 8 N 1.31513 * 120.00262 * 185.64227 * 7 5 3 9 9 Si 1.86800 * 119.99894 * 5.63814 * 7 5 3 10 10 H 1.48508 * 109.47394 * 84.62569 * 9 7 5 11 11 H 1.48497 * 109.47414 * 204.62571 * 9 7 5 12 12 H 1.48506 * 109.47291 * 324.62744 * 9 7 5 13 13 O 1.45204 * 109.47204 * 65.58445 * 3 2 1 14 14 C 1.34775 * 116.99656 * 269.99611 * 13 3 2 15 15 O 1.21537 * 120.00226 * 0.02562 * 14 13 3 16 16 C 1.47235 * 119.99709 * 179.97438 * 14 13 3 17 17 C 1.36408 * 127.15719 * 359.68930 * 16 14 13 18 18 O 1.33920 * 108.55632 * 179.86843 * 17 16 14 19 19 C 1.34315 * 110.91576 * 0.41395 * 18 17 16 20 20 S 1.76204 * 125.52221 * 179.76934 * 19 18 17 21 21 C 1.81397 * 102.99605 * 359.97228 * 20 19 18 22 22 C 1.35107 * 108.96196 * 359.74597 * 19 18 17 23 23 H 1.09001 * 109.47186 * 300.00083 * 1 2 3 24 24 H 1.09005 * 109.46929 * 59.99818 * 1 2 3 25 25 H 1.08992 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47186 * 239.99917 * 2 1 3 27 27 H 1.09005 * 109.46929 * 120.00182 * 2 1 3 28 28 H 0.97002 * 120.00041 * 180.02562 * 8 7 5 29 29 H 1.08002 * 125.72730 * 359.97438 * 17 16 14 30 30 H 1.08994 * 109.47309 * 299.99855 * 21 20 19 31 31 H 1.08998 * 109.47328 * 60.00699 * 21 20 19 32 32 H 1.09003 * 109.47165 * 179.97438 * 21 20 19 33 33 H 1.08005 * 127.06330 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9844 -0.8358 5 6 3.5407 1.4446 -0.1382 6 1 4.1641 1.4793 0.7430 7 6 4.1178 1.4082 -1.3898 8 7 5.4229 1.2981 -1.5093 9 14 3.0460 1.5151 -2.9160 10 1 2.7734 2.9406 -3.2307 11 1 3.7491 0.8813 -4.0601 12 1 1.7631 0.8084 -2.6704 13 8 1.6679 2.0874 1.2466 14 6 0.4802 2.7238 1.2754 15 8 -0.2254 2.7388 0.2859 16 6 0.0369 3.3998 2.5060 17 6 0.7035 3.4686 3.6941 18 8 -0.0367 4.1754 4.5577 19 6 -1.1853 4.5764 3.9887 20 16 -2.4433 5.5239 4.7790 21 6 -1.7785 5.7726 6.4483 22 6 -1.2198 4.1361 2.7118 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8289 1.2728 -2.3899 29 1 1.6675 3.0285 3.9028 30 1 -1.6212 4.8050 6.9247 31 1 -0.8297 6.3055 6.3859 32 1 -2.4850 6.3575 7.0374 33 1 -2.0084 4.2922 1.9905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870310174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:31 Heat of formation + Delta-G solvation = -95.461415 kcal Electronic energy + Delta-G solvation = -18287.529430 eV Core-core repulsion = 15212.742774 eV Total energy + Delta-G solvation = -3074.786656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.63071 -41.22322 -37.67603 -35.41290 -34.22543 -33.77064 -31.24012 -29.90980 -29.68743 -25.85889 -24.58031 -22.93686 -22.31722 -21.35280 -20.08542 -18.91655 -18.27115 -17.61615 -17.22030 -17.01817 -16.82904 -16.14500 -15.40626 -15.07544 -14.83963 -14.45683 -14.37839 -14.15482 -14.00485 -13.92867 -13.47834 -13.18962 -13.13115 -12.94451 -12.63588 -11.96248 -11.88324 -11.78006 -11.58716 -11.37857 -11.28387 -11.05911 -10.81620 -10.71024 -8.48886 -8.46462 -6.54865 0.03937 0.08729 0.65362 0.93049 1.25595 1.29979 1.39966 1.78845 2.03338 2.20500 2.41455 2.89342 3.49597 3.84660 4.10873 4.16714 4.24260 4.25995 4.28281 4.31295 4.42642 4.58457 4.74093 4.87513 4.97784 4.99717 5.07306 5.09248 5.34161 5.44285 5.58622 5.61003 6.14792 6.52060 6.87770 7.12103 8.68731 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035560 B = 0.004246 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.202256 B = 6592.898996 C = 6814.638158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.196 3.804 4 H 0.033 0.967 5 C -0.533 4.533 6 H 0.052 0.948 7 C 0.038 3.962 8 N -0.923 5.923 9 Si 0.920 3.080 10 H -0.272 1.272 11 H -0.267 1.267 12 H -0.244 1.244 13 O -0.350 6.350 14 C 0.524 3.476 15 O -0.540 6.540 16 C -0.241 4.241 17 C 0.080 3.920 18 O -0.163 6.163 19 C -0.035 4.035 20 S -0.022 6.022 21 C -0.147 4.147 22 C -0.144 4.144 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.276 0.724 29 H 0.252 0.748 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 6.607 14.992 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.143 3.857 4 H 0.050 0.950 5 C -0.570 4.570 6 H 0.070 0.930 7 C -0.163 4.163 8 N -0.561 5.561 9 Si 0.742 3.258 10 H -0.197 1.197 11 H -0.192 1.192 12 H -0.168 1.168 13 O -0.267 6.267 14 C 0.371 3.629 15 O -0.432 6.432 16 C -0.244 4.244 17 C 0.006 3.994 18 O -0.060 6.060 19 C -0.193 4.193 20 S 0.215 5.785 21 C -0.315 4.315 22 C -0.172 4.172 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.268 0.732 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.048 7.080 14.539 22.783 hybrid contribution 1.266 -0.478 -0.910 1.631 sum -14.782 6.602 13.629 21.162 Atomic orbital electron populations 1.21822 0.95393 1.01708 1.00893 1.22083 0.95419 0.96868 1.02634 1.20796 0.94074 0.90282 0.80585 0.94958 1.20917 0.89393 1.52609 0.94122 0.93002 1.25523 0.96028 0.93300 1.01404 1.69948 1.11174 1.49388 1.25611 0.86169 0.80402 0.79631 0.79553 1.19733 1.19200 1.16777 1.86594 1.34952 1.63155 1.41972 1.20429 0.79650 0.75585 0.87251 1.90756 1.55585 1.59975 1.36922 1.20625 0.99430 1.10422 0.93948 1.25264 0.96645 0.91440 0.86011 1.84002 1.26186 1.55689 1.40095 1.24391 0.91564 1.07255 0.96047 1.85866 1.18223 1.62316 1.12122 1.23799 1.06648 1.07406 0.93677 1.22486 0.97742 1.01204 0.95767 0.94146 0.93862 0.90796 0.91281 0.91164 0.91491 0.73222 0.88677 0.88836 0.84331 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 8.57 71.98 0.62 -4.77 16 2 C -0.13 -5.76 5.30 30.59 0.16 -5.59 16 3 C 0.20 9.82 1.80 29.85 0.05 9.88 16 4 H 0.03 1.71 4.83 -2.39 -0.01 1.70 16 5 C -0.53 -30.64 9.24 25.60 0.24 -30.40 16 6 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 7 C 0.04 2.20 5.47 84.65 0.46 2.66 16 8 N -0.92 -55.64 13.96 21.45 0.30 -55.34 16 9 Si 0.92 43.91 26.27 68.60 1.80 45.71 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.24 -11.09 6.29 99.48 0.63 -10.47 16 13 O -0.35 -16.05 9.66 -56.86 -0.55 -16.60 16 14 C 0.52 21.95 6.43 70.19 0.45 22.40 16 15 O -0.54 -24.92 14.17 19.71 0.28 -24.64 16 16 C -0.24 -7.97 6.31 -19.01 -0.12 -8.09 16 17 C 0.08 2.06 11.93 67.39 0.80 2.86 16 18 O -0.16 -3.81 10.19 1.04 0.01 -3.80 16 19 C -0.03 -0.83 7.32 67.10 0.49 -0.34 16 20 S -0.02 -0.37 22.74 -56.49 -1.28 -1.66 16 21 C -0.15 -1.40 10.45 113.37 1.18 -0.21 16 22 C -0.14 -4.20 10.97 23.88 0.26 -3.94 16 23 H 0.04 1.55 6.05 -2.39 -0.01 1.53 16 24 H 0.04 1.73 7.82 -2.38 -0.02 1.72 16 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.07 3.02 6.99 -2.39 -0.02 3.01 16 27 H 0.07 2.92 8.14 -2.38 -0.02 2.91 16 28 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.25 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.17 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -69.30 300.15 6.20 -63.09 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.04 Total: 8.78 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.61 Total: -15.54 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.30 Total: -55.34 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.26 Total: -45.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.80 Total: 45.71 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -1.28 Total: -1.66 kcal Total: -69.30 6.20 -63.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.367 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds