Wall clock time and date at job start Mon Mar 30 2020 01:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47462 * 2 1 4 4 H 1.09002 * 109.47118 * 54.49980 * 3 2 1 5 5 C 1.50697 * 109.47738 * 174.50340 * 3 2 1 6 6 H 1.07997 * 119.99956 * 114.20357 * 5 3 2 7 7 C 1.37880 * 119.99677 * 294.20924 * 5 3 2 8 8 N 1.31517 * 119.99938 * 159.14621 * 7 5 3 9 9 Si 1.86798 * 120.00035 * 339.14475 * 7 5 3 10 10 H 1.48503 * 109.46718 * 270.00035 * 9 7 5 11 11 H 1.48495 * 109.47359 * 29.99802 * 9 7 5 12 12 H 1.48504 * 109.47137 * 150.00329 * 9 7 5 13 13 O 1.45206 * 109.47136 * 294.50568 * 3 2 1 14 14 C 1.34780 * 116.99826 * 89.99642 * 13 3 2 15 15 O 1.21532 * 120.00092 * 359.97438 * 14 13 3 16 16 C 1.47232 * 119.99466 * 180.02562 * 14 13 3 17 17 C 1.36417 * 127.16179 * 359.68390 * 16 14 13 18 18 O 1.33924 * 108.55613 * 179.83480 * 17 16 14 19 19 C 1.34314 * 110.91485 * 0.44759 * 18 17 16 20 20 S 1.76197 * 125.51736 * 179.74249 * 19 18 17 21 21 C 1.81404 * 102.99901 * 359.97438 * 20 19 18 22 22 C 1.35104 * 108.96546 * 359.72791 * 19 18 17 23 23 H 1.08996 * 109.47578 * 59.99883 * 1 2 3 24 24 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46909 * 299.99620 * 1 2 3 26 26 H 1.09008 * 109.46909 * 240.00380 * 2 1 3 27 27 H 1.08996 * 109.47664 * 120.00667 * 2 1 3 28 28 H 0.97005 * 119.99541 * 354.92611 * 8 7 5 29 29 H 1.08007 * 125.71583 * 0.02562 * 17 16 14 30 30 H 1.09000 * 109.47203 * 299.99730 * 21 20 19 31 31 H 1.08992 * 109.46905 * 59.99845 * 21 20 19 32 32 H 1.09006 * 109.47016 * 179.97438 * 21 20 19 33 33 H 1.08003 * 127.06337 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5408 1.4447 0.1361 6 1 4.1562 1.8015 -0.6765 7 6 4.1283 0.9911 1.2981 8 7 5.3852 0.6038 1.2917 9 14 3.1391 0.9266 2.8813 10 1 3.2808 2.2150 3.6062 11 1 1.7079 0.6934 2.5617 12 1 3.6424 -0.1795 3.7348 13 8 1.6660 2.0881 -1.2457 14 6 0.4782 2.7244 -1.2725 15 8 -0.2259 2.7388 -0.2820 16 6 0.0332 3.4010 -2.5021 17 6 0.7035 3.4806 -3.6876 18 8 -0.0430 4.1783 -4.5533 19 6 -1.1910 4.5787 -3.9823 20 16 -2.4504 5.5259 -4.7707 21 6 -1.7874 5.7767 -6.4405 22 6 -1.2238 4.1374 -2.7059 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.8772 0.5674 0.4565 29 1 1.6722 3.0500 -3.8943 30 1 -0.8389 6.3102 -6.3785 31 1 -1.6298 4.8096 -6.9178 32 1 -2.4954 6.3607 -7.0286 33 1 -2.0112 4.2935 -1.9832 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870310175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:33 Heat of formation + Delta-G solvation = -96.761200 kcal Electronic energy + Delta-G solvation = -18293.741229 eV Core-core repulsion = 15218.898210 eV Total energy + Delta-G solvation = -3074.843019 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.66216 -41.25649 -37.72413 -35.57633 -34.24349 -33.74858 -31.26838 -29.88099 -29.46443 -25.76012 -24.32766 -22.96958 -22.40932 -21.36007 -20.22008 -19.51738 -18.24978 -17.65415 -17.19945 -17.02715 -16.75062 -15.81318 -15.36349 -15.16159 -14.67419 -14.58117 -14.47172 -14.37568 -14.14427 -13.98494 -13.43757 -13.17246 -12.97871 -12.72487 -12.45825 -11.90988 -11.81387 -11.79559 -11.52902 -11.45662 -11.30850 -10.91603 -10.74709 -10.54980 -8.94582 -8.50790 -6.54374 0.01715 0.04804 0.62900 0.90959 1.43546 1.44687 1.66606 1.77613 1.99846 2.36544 2.38940 2.87004 3.46247 3.80938 4.07876 4.16561 4.22279 4.24232 4.26121 4.29189 4.41198 4.60373 4.69940 4.85828 4.95601 4.97609 5.05613 5.08132 5.37478 5.44300 5.55331 5.82489 5.93714 6.39533 6.85740 7.19789 8.46367 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.004166 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.806999 B = 6718.950352 C = 7001.135310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.204 3.796 4 H 0.031 0.969 5 C -0.622 4.622 6 H 0.036 0.964 7 C 0.006 3.994 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.270 1.270 11 H -0.250 1.250 12 H -0.269 1.269 13 O -0.353 6.353 14 C 0.524 3.476 15 O -0.536 6.536 16 C -0.240 4.240 17 C 0.077 3.923 18 O -0.163 6.163 19 C -0.034 4.034 20 S -0.020 6.020 21 C -0.148 4.148 22 C -0.143 4.143 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.262 0.738 29 H 0.249 0.751 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 7.910 -14.923 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.150 3.850 4 H 0.048 0.952 5 C -0.659 4.659 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.546 5.546 9 Si 0.886 3.114 10 H -0.196 1.196 11 H -0.174 1.174 12 H -0.194 1.194 13 O -0.269 6.269 14 C 0.370 3.630 15 O -0.428 6.428 16 C -0.243 4.243 17 C 0.004 3.996 18 O -0.060 6.060 19 C -0.192 4.192 20 S 0.217 5.783 21 C -0.316 4.316 22 C -0.171 4.171 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.265 0.735 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.440 8.058 -13.003 22.456 hybrid contribution 1.687 -0.214 -1.693 2.399 sum -14.753 7.843 -14.695 22.251 Atomic orbital electron populations 1.21811 0.95099 1.01761 1.01061 1.22176 0.95743 0.97222 1.02197 1.20796 0.94290 0.89749 0.80163 0.95162 1.21995 0.90480 1.49210 1.04261 0.94595 1.26879 0.97041 0.91194 1.04492 1.70927 1.11407 1.41725 1.30557 0.83789 0.76101 0.78650 0.72877 1.19564 1.17408 1.19364 1.86545 1.35126 1.63251 1.41988 1.20417 0.79612 0.75649 0.87299 1.90754 1.55527 1.59808 1.36710 1.20628 0.99352 1.10351 0.93995 1.25212 0.96586 0.91714 0.86112 1.84001 1.26059 1.56092 1.39813 1.24419 0.91653 1.07142 0.96008 1.85868 1.18096 1.62209 1.12131 1.23804 1.06675 1.07392 0.93703 1.22490 0.97746 1.01029 0.95835 0.94280 0.90826 0.93328 0.91991 0.91294 0.92850 0.73500 0.88832 0.88726 0.84283 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.57 71.98 0.62 -4.82 16 2 C -0.14 -6.07 5.08 30.59 0.16 -5.91 16 3 C 0.20 10.36 1.80 29.85 0.05 10.41 16 4 H 0.03 1.61 5.57 -2.39 -0.01 1.60 16 5 C -0.62 -36.03 9.13 25.60 0.23 -35.80 16 6 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 7 C 0.01 0.33 5.25 84.66 0.44 0.77 16 8 N -0.91 -55.49 13.70 21.45 0.29 -55.20 16 9 Si 1.07 49.78 26.34 68.60 1.81 51.59 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.25 -10.85 5.89 99.48 0.59 -10.27 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 O -0.35 -16.43 9.66 -56.91 -0.55 -16.98 16 14 C 0.52 22.03 6.43 70.19 0.45 22.48 16 15 O -0.54 -24.64 14.17 19.73 0.28 -24.36 16 16 C -0.24 -7.96 6.31 -19.01 -0.12 -8.08 16 17 C 0.08 2.01 11.93 67.39 0.80 2.82 16 18 O -0.16 -3.83 10.19 1.01 0.01 -3.82 16 19 C -0.03 -0.82 7.32 67.10 0.49 -0.33 16 20 S -0.02 -0.33 22.74 -56.49 -1.28 -1.62 16 21 C -0.15 -1.38 10.45 113.37 1.18 -0.20 16 22 C -0.14 -4.15 10.97 23.88 0.26 -3.89 16 23 H 0.04 1.52 6.05 -2.39 -0.01 1.51 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.05 1.95 7.82 -2.38 -0.02 1.93 16 26 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 27 H 0.07 3.09 5.66 -2.39 -0.01 3.08 16 28 H 0.26 16.01 8.73 -92.70 -0.81 15.20 16 29 H 0.25 5.10 8.06 -2.91 -0.02 5.08 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -69.53 298.82 6.10 -63.44 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.96 Total: 9.48 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.58 Total: -22.54 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.29 Total: -55.20 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.26 Total: -45.15 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.81 Total: 51.59 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.28 Total: -1.62 kcal Total: -69.53 6.10 -63.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.325 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds