Wall clock time and date at job start Mon Mar 30 2020 00:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50694 * 109.47550 * 180.02562 * 14 13 11 16 16 C 1.38756 * 120.77565 * 89.99989 * 15 14 13 17 17 C 1.38096 * 119.22542 * 179.97438 * 16 15 14 18 18 N 1.31937 * 120.80314 * 359.97438 * 17 16 15 19 19 C 1.32035 * 121.68511 * 0.02562 * 18 17 16 20 20 F 1.35098 * 119.65040 * 179.97438 * 19 18 17 21 21 C 1.38498 * 120.77635 * 269.72318 * 15 14 13 22 22 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 24 24 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 25 25 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 26 26 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 27 27 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 28 28 H 1.08001 * 120.38290 * 359.95695 * 16 15 14 29 29 H 1.07999 * 119.59791 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.43206 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 6 3.4849 -8.6836 -0.0203 16 6 4.0305 -9.1456 1.1689 17 6 5.0876 -10.0332 1.1259 18 7 5.5791 -10.4430 -0.0279 19 6 5.0861 -10.0254 -1.1793 20 9 5.6215 -10.4714 -2.3367 21 6 4.0223 -9.1380 -1.2131 22 1 -0.4851 0.8400 0.0004 23 1 3.1252 -3.7316 0.8875 24 1 3.1238 -3.7309 -0.8925 25 1 3.8010 -6.1834 -0.0093 26 1 1.7235 -7.8794 0.8762 27 1 1.7203 -7.8707 -0.9037 28 1 3.6333 -8.8146 2.1171 29 1 5.5171 -10.3963 2.0478 30 1 3.6198 -8.8024 -2.1575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871002653.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:49 Heat of formation + Delta-G solvation = -45.787636 kcal Electronic energy + Delta-G solvation = -16819.510927 eV Core-core repulsion = 13655.710734 eV Total energy + Delta-G solvation = -3163.800193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.35242 -40.65209 -39.15891 -35.47537 -32.79075 -32.46275 -31.33189 -29.66140 -26.67718 -25.48003 -24.10900 -22.49905 -20.55920 -18.33200 -17.74423 -17.65425 -16.59255 -16.50286 -16.30759 -15.87969 -15.31648 -14.83523 -14.78724 -14.11106 -14.04512 -13.51084 -13.35976 -13.22448 -12.86675 -12.59712 -12.48577 -11.83925 -11.09274 -11.06081 -10.81169 -10.49036 -10.16712 -9.85966 -9.51268 -9.45072 -9.13029 -9.06860 -8.29310 -6.54899 -6.25345 -3.96548 0.46951 0.51236 2.88115 2.96299 3.14109 3.15702 3.20210 3.26798 3.32468 3.68823 3.92673 4.16053 4.16997 4.46209 4.51863 4.97353 5.02719 5.08928 5.10110 5.24511 5.33994 5.44848 5.64705 5.77578 5.83033 6.07273 6.14333 6.37969 7.17407 7.52080 7.56394 8.31539 8.45800 9.20135 10.82058 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037744 B = 0.003097 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.653603 B = 9037.384770 C = 9269.087239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.736 5.736 14 C 0.159 3.841 15 C -0.030 4.030 16 C -0.166 4.166 17 C 0.136 3.864 18 N -0.513 5.513 19 C 0.306 3.694 20 F -0.112 7.112 21 C -0.176 4.176 22 H 0.269 0.731 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.400 0.600 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.171 0.829 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -18.500 1.239 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.392 5.392 14 C 0.036 3.964 15 C -0.038 4.038 16 C -0.186 4.186 17 C -0.020 4.020 18 N -0.228 5.228 19 C 0.153 3.847 20 F -0.091 7.091 21 C -0.198 4.198 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.234 0.766 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.167 0.833 29 H 0.188 0.812 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.549 -19.317 1.172 21.157 hybrid contribution 1.939 1.737 -0.264 2.616 sum 10.488 -17.581 0.908 20.492 Atomic orbital electron populations 1.70015 1.05959 1.27523 1.46762 1.24995 0.95036 0.99058 0.94466 0.86159 0.79408 0.81505 0.78383 1.20243 1.20731 1.19675 1.22864 0.94920 0.91600 1.59107 0.90886 1.85402 1.04745 0.96360 1.96741 1.23534 1.06727 0.95033 1.05092 1.20365 0.86436 0.86190 0.74964 1.90720 1.15283 1.85467 1.47263 1.46011 1.10230 1.04518 1.78436 1.20167 0.92268 0.79735 1.04270 1.20282 0.95714 0.95505 0.92289 1.22242 0.97939 0.98981 0.99440 1.22574 0.92349 0.92680 0.94439 1.67034 1.31229 1.26436 0.98070 1.18141 0.91352 0.93351 0.81852 1.91643 1.85437 1.87826 1.44158 1.21854 0.97512 0.99554 1.00852 0.92137 0.89081 0.89081 0.76586 0.89661 0.89849 0.83335 0.81241 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 11 C 0.53 9.24 7.85 -10.98 -0.09 9.15 16 12 O -0.51 -10.96 15.86 5.55 0.09 -10.87 16 13 N -0.74 -8.71 5.55 -61.47 -0.34 -9.06 16 14 C 0.16 1.57 5.85 -5.20 -0.03 1.53 16 15 C -0.03 -0.24 5.28 -104.34 -0.55 -0.79 16 16 C -0.17 -1.12 9.81 -39.44 -0.39 -1.51 16 17 C 0.14 0.98 11.18 -17.56 -0.20 0.78 16 18 N -0.51 -5.19 10.37 -13.59 -0.14 -5.33 16 19 C 0.31 3.08 8.41 -17.34 -0.15 2.93 16 20 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 21 C -0.18 -1.49 9.79 -39.36 -0.39 -1.88 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 24 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 25 H 0.40 3.79 8.46 -40.82 -0.35 3.45 16 26 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 28 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 29 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 294.30 15.07 4.44 4.44 Total: -1.00 -34.28 294.30 -6.63 -40.91 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.84 Total: -0.92 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.36 Total: -5.23 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.25 Total: -39.46 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.28 -6.63 -40.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871002653.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.880 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds