Wall clock time and date at job start Mon Mar 30 2020 00:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50694 * 109.47550 * 180.02562 * 14 13 11 16 16 C 1.38756 * 120.77565 * 89.99989 * 15 14 13 17 17 C 1.38096 * 119.22542 * 179.97438 * 16 15 14 18 18 N 1.31937 * 120.80314 * 359.97438 * 17 16 15 19 19 C 1.32035 * 121.68511 * 0.02562 * 18 17 16 20 20 F 1.35098 * 119.65040 * 179.97438 * 19 18 17 21 21 C 1.38498 * 120.77635 * 269.72318 * 15 14 13 22 22 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 24 24 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 25 25 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 26 26 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 27 27 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 28 28 H 1.08001 * 120.38290 * 359.95695 * 16 15 14 29 29 H 1.07999 * 119.59791 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.43206 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 6 3.4849 -8.6836 -0.0203 16 6 4.0305 -9.1456 1.1689 17 6 5.0876 -10.0332 1.1259 18 7 5.5791 -10.4430 -0.0279 19 6 5.0861 -10.0254 -1.1793 20 9 5.6215 -10.4714 -2.3367 21 6 4.0223 -9.1380 -1.2131 22 1 -0.4851 0.8400 0.0004 23 1 3.1252 -3.7316 0.8875 24 1 3.1238 -3.7309 -0.8925 25 1 3.8010 -6.1834 -0.0093 26 1 1.7235 -7.8794 0.8762 27 1 1.7203 -7.8707 -0.9037 28 1 3.6333 -8.8146 2.1171 29 1 5.5171 -10.3963 2.0478 30 1 3.6198 -8.8024 -2.1575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871002653.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:49 Heat of formation + Delta-G solvation = -70.511418 kcal Electronic energy + Delta-G solvation = -16820.583031 eV Core-core repulsion = 13655.710734 eV Total energy + Delta-G solvation = -3164.872297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.09731 -41.36878 -40.42217 -36.48460 -34.57695 -33.75150 -31.94418 -31.02450 -27.87224 -27.36932 -24.72965 -23.24362 -21.84976 -19.92845 -18.80946 -18.42633 -17.78212 -17.33829 -17.12237 -16.90992 -16.86206 -16.55187 -15.81297 -15.44921 -14.96708 -14.71454 -14.49083 -14.21071 -14.16253 -13.67208 -13.37725 -13.15724 -12.98274 -12.87727 -12.60783 -11.73606 -11.34981 -11.13611 -10.82830 -10.77271 -10.26773 -10.21823 -10.07257 -8.65397 -8.34139 -6.11787 -0.17145 -0.12271 1.28530 1.43191 1.48387 1.58394 1.59200 2.20745 2.28429 2.50028 2.63092 3.00277 3.22077 3.32967 3.57561 3.86350 3.90978 3.98894 4.25916 4.34109 4.51372 4.53287 4.58884 4.70944 4.77712 5.14696 5.29702 5.42950 5.54081 6.20529 6.42234 6.56293 7.07626 7.18727 8.74924 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037744 B = 0.003097 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.653603 B = 9037.384770 C = 9269.087239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.539 3.461 12 O -0.560 6.560 13 N -0.710 5.710 14 C 0.162 3.838 15 C -0.031 4.031 16 C -0.151 4.151 17 C 0.136 3.864 18 N -0.537 5.537 19 C 0.284 3.716 20 F -0.124 7.124 21 C -0.172 4.172 22 H 0.271 0.729 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.416 0.584 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.174 0.826 29 H 0.202 0.798 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -18.734 2.105 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.325 3.675 12 O -0.438 6.438 13 N -0.365 5.365 14 C 0.039 3.961 15 C -0.039 4.039 16 C -0.171 4.171 17 C -0.020 4.020 18 N -0.252 5.252 19 C 0.131 3.869 20 F -0.103 7.103 21 C -0.194 4.194 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.252 0.748 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.191 0.809 29 H 0.219 0.781 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.613 -19.593 2.031 22.375 hybrid contribution 1.372 1.651 -0.491 2.202 sum 11.985 -17.942 1.540 21.632 Atomic orbital electron populations 1.70177 1.07936 1.28605 1.48018 1.26105 0.95945 1.03271 0.93765 0.84970 0.78239 0.76133 0.78747 1.19416 1.20368 1.18173 1.23213 0.95370 0.92083 1.58825 0.89904 1.85555 1.10431 0.99156 1.97057 1.23379 1.03623 0.94274 1.06934 1.19995 0.86108 0.86449 0.74971 1.90713 1.17242 1.85952 1.49894 1.45709 1.10388 1.04355 1.76018 1.20224 0.92974 0.78472 1.04455 1.20088 0.95411 0.95636 0.92782 1.22520 0.96968 0.97722 0.99876 1.23141 0.92141 0.92150 0.94567 1.67046 1.32145 1.27206 0.98841 1.18313 0.92312 0.94503 0.81754 1.91606 1.85727 1.88115 1.44825 1.21900 0.96930 0.99037 1.01519 0.91998 0.87012 0.87244 0.74770 0.89133 0.90198 0.80867 0.78121 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.55 -30.55 9.50 67.95 0.65 -29.91 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 10 C -0.13 -4.84 6.16 71.24 0.44 -4.41 16 11 C 0.54 17.94 7.85 87.66 0.69 18.62 16 12 O -0.56 -23.92 15.86 -3.04 -0.05 -23.97 16 13 N -0.71 -15.05 5.55 -466.79 -2.59 -17.64 16 14 C 0.16 2.82 5.85 85.63 0.50 3.32 16 15 C -0.03 -0.42 5.28 -19.68 -0.10 -0.52 16 16 C -0.15 -1.52 9.81 22.36 0.22 -1.30 16 17 C 0.14 1.55 11.18 84.64 0.95 2.50 16 18 N -0.54 -9.98 10.37 -196.92 -2.04 -12.02 16 19 C 0.28 5.41 8.41 84.74 0.71 6.12 16 20 F -0.12 -2.64 17.29 44.97 0.78 -1.87 16 21 C -0.17 -2.64 9.79 22.41 0.22 -2.42 16 22 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 24 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 25 H 0.42 6.49 8.46 -92.71 -0.78 5.70 16 26 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 27 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 28 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 29 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 30 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -76.25 294.30 2.38 -73.87 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.39 Total: 7.53 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 4.73 Total: -6.75 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -4.35 Total: -84.51 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -76.25 2.38 -73.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871002653.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.360 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds