Wall clock time and date at job start Mon Mar 30 2020 01:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38185 * 120.39159 * 89.99913 * 13 12 11 15 15 N 1.31872 * 120.83230 * 180.02562 * 14 13 12 16 16 C 1.31957 * 121.73741 * 359.97438 * 15 14 13 17 17 Cl 1.73595 * 119.65346 * 180.02562 * 16 15 14 18 18 C 1.38582 * 120.69021 * 0.02562 * 16 15 14 19 19 F 1.35102 * 120.44746 * 179.97438 * 18 16 15 20 20 C 1.38647 * 120.38726 * 269.72445 * 13 12 11 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 27 27 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 28 28 H 1.07995 * 119.58074 * 359.97438 * 14 13 12 29 29 H 1.07996 * 120.79643 * 0.02562 * 20 13 12 30 30 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 31 31 H 1.08992 * 113.86038 * 139.01836 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.1211 -2.2659 3.2037 14 6 5.4722 -1.5820 4.2140 15 7 6.1543 -0.9674 5.1605 16 6 7.4737 -0.9789 5.1843 17 17 8.3170 -0.1521 6.4566 18 6 8.1929 -1.6442 4.2042 19 9 9.5436 -1.6524 4.2330 20 6 7.5070 -2.3067 3.1957 21 6 4.1311 -2.6025 0.0450 22 1 -0.4849 0.8400 0.0004 23 1 3.9361 -0.5532 -0.7738 24 1 4.5830 0.0035 1.5245 25 1 3.4736 -1.2616 2.2133 26 1 4.3746 -3.2920 2.5323 27 1 5.8904 -3.8295 1.7696 28 1 4.3928 -1.5498 4.2281 29 1 8.0400 -2.8371 2.4206 30 1 3.4728 -3.3581 0.4740 31 1 4.5804 -2.9157 -0.8973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877624543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:00 Heat of formation + Delta-G solvation = 20.394355 kcal Electronic energy + Delta-G solvation = -17879.782729 eV Core-core repulsion = 14716.808696 eV Total energy + Delta-G solvation = -3162.974033 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.22962 -40.55190 -38.90721 -36.90013 -33.77668 -32.50553 -31.53670 -29.17194 -26.13972 -25.41959 -24.13985 -23.29049 -21.33438 -18.81148 -17.80542 -17.74085 -17.26591 -16.94012 -16.22392 -15.35725 -14.85430 -14.60790 -14.29040 -13.98939 -13.65442 -13.47424 -13.33180 -12.72776 -12.26795 -12.01452 -11.89594 -11.80547 -11.49352 -11.07254 -10.58776 -10.20900 -10.07484 -10.03125 -9.89468 -9.61389 -9.25354 -8.92859 -8.65072 -8.23888 -6.17592 -4.19005 0.51438 0.77151 1.50419 3.23353 3.24730 3.34344 3.36914 3.65822 4.14373 4.29628 4.35620 4.55343 4.65119 4.84267 5.08528 5.16829 5.22502 5.54196 5.61969 5.71311 5.91932 5.98262 6.15506 6.21361 6.29141 6.35631 6.61685 6.78830 7.24780 7.36952 7.58558 7.63606 8.39727 8.84842 9.45060 10.94776 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.004768 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.092969 B = 5871.611307 C = 6436.181935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.010 4.010 11 N -0.486 5.486 12 C 0.058 3.942 13 C -0.083 4.083 14 C 0.118 3.882 15 N -0.449 5.449 16 C 0.134 3.866 17 Cl -0.020 7.020 18 C 0.065 3.935 19 F -0.120 7.120 20 C -0.082 4.082 21 C 0.014 3.986 22 H 0.265 0.735 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.066 0.934 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 -4.762 8.485 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.554 4.554 8 H 0.093 0.907 9 C -0.020 4.020 10 C -0.139 4.139 11 N -0.209 5.209 12 C -0.071 4.071 13 C -0.085 4.085 14 C -0.040 4.040 15 N -0.158 5.158 16 C -0.031 4.031 17 Cl 0.008 6.992 18 C 0.042 3.958 19 F -0.099 7.099 20 C -0.109 4.109 21 C -0.114 4.114 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.191 0.809 29 H 0.176 0.824 30 H 0.084 0.916 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.359 -3.963 9.064 18.269 hybrid contribution 0.346 0.358 -0.081 0.504 sum 15.705 -3.605 8.983 18.448 Atomic orbital electron populations 1.69905 1.06415 1.27207 1.49872 1.24992 0.94611 0.99192 0.93903 0.86953 0.80858 0.83531 0.78768 1.20286 1.21427 1.17969 1.20946 0.88250 0.94547 1.51704 0.90735 1.20726 0.96502 0.92335 0.92417 1.24604 0.92748 0.94935 1.01608 1.68756 1.35208 1.08151 1.08743 1.21596 0.98569 0.95899 0.91021 1.20918 0.93359 0.97581 0.96690 1.22847 1.00905 0.91797 0.88469 1.67126 1.05554 1.17694 1.25444 1.21723 0.90522 0.98639 0.92245 1.98413 1.74439 1.76819 1.49531 1.18209 0.78204 1.02058 0.97321 1.91553 1.27442 1.94802 1.96070 1.21559 0.94266 0.98135 0.96901 1.23919 0.92503 0.99209 0.95795 0.92511 0.92885 0.91294 0.91360 0.92107 0.89648 0.80852 0.82398 0.91563 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.96 55.43 0.77 -25.51 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 20.55 27.08 -169.99 -4.60 15.94 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -5.69 5.27 56.52 0.30 -5.39 16 7 C -0.52 -13.49 9.33 -34.44 -0.32 -13.81 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.00 -0.01 2.88 -90.84 -0.26 -0.27 16 10 C -0.01 -0.20 5.61 -2.57 -0.01 -0.21 16 11 N -0.49 -8.06 6.26 -239.49 -1.50 -9.56 16 12 C 0.06 0.76 5.00 -4.97 -0.02 0.73 16 13 C -0.08 -1.05 5.13 -104.49 -0.54 -1.59 16 14 C 0.12 1.58 10.15 -17.55 -0.18 1.41 16 15 N -0.45 -6.52 10.34 -10.31 -0.11 -6.63 16 16 C 0.13 1.84 7.28 -17.37 -0.13 1.71 16 17 Cl -0.02 -0.25 28.78 -51.86 -1.49 -1.75 16 18 C 0.06 0.82 7.31 -39.25 -0.29 0.53 16 19 F -0.12 -1.48 16.86 2.25 0.04 -1.44 16 20 C -0.08 -0.96 9.84 -39.22 -0.39 -1.34 16 21 C 0.01 0.25 7.53 -2.76 -0.02 0.23 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 24 H 0.07 1.38 6.82 -51.93 -0.35 1.03 16 25 H 0.07 1.30 7.09 -51.93 -0.37 0.93 16 26 H 0.06 0.78 7.64 -51.93 -0.40 0.39 16 27 H 0.09 0.95 8.09 -51.92 -0.42 0.53 16 28 H 0.17 2.15 7.46 -52.49 -0.39 1.76 16 29 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.07 1.16 7.74 -51.92 -0.40 0.75 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -28.47 282.91 -8.09 -36.57 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.21 Total: -1.24 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.25 Total: -10.65 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.83 Total: -41.70 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.60 Total: 15.94 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.49 Total: -1.75 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.47 -8.09 -36.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877624543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.960 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds