Wall clock time and date at job start Mon Mar 30 2020 01:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38185 * 120.39159 * 89.99913 * 13 12 11 15 15 N 1.31872 * 120.83230 * 180.02562 * 14 13 12 16 16 C 1.31957 * 121.73741 * 359.97438 * 15 14 13 17 17 Cl 1.73595 * 119.65346 * 180.02562 * 16 15 14 18 18 C 1.38582 * 120.69021 * 0.02562 * 16 15 14 19 19 F 1.35102 * 120.44746 * 179.97438 * 18 16 15 20 20 C 1.38647 * 120.38726 * 269.72445 * 13 12 11 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 27 27 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 28 28 H 1.07995 * 119.58074 * 359.97438 * 14 13 12 29 29 H 1.07996 * 120.79643 * 0.02562 * 20 13 12 30 30 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 31 31 H 1.08992 * 113.86038 * 139.01836 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.1211 -2.2659 3.2037 14 6 5.4722 -1.5820 4.2140 15 7 6.1543 -0.9674 5.1605 16 6 7.4737 -0.9789 5.1843 17 17 8.3170 -0.1521 6.4566 18 6 8.1929 -1.6442 4.2042 19 9 9.5436 -1.6524 4.2330 20 6 7.5070 -2.3067 3.1957 21 6 4.1311 -2.6025 0.0450 22 1 -0.4849 0.8400 0.0004 23 1 3.9361 -0.5532 -0.7738 24 1 4.5830 0.0035 1.5245 25 1 3.4736 -1.2616 2.2133 26 1 4.3746 -3.2920 2.5323 27 1 5.8904 -3.8295 1.7696 28 1 4.3928 -1.5498 4.2281 29 1 8.0400 -2.8371 2.4206 30 1 3.4728 -3.3581 0.4740 31 1 4.5804 -2.9157 -0.8973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877624543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:00 Heat of formation + Delta-G solvation = 1.058737 kcal Electronic energy + Delta-G solvation = -17880.621184 eV Core-core repulsion = 14716.808696 eV Total energy + Delta-G solvation = -3163.812488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.18322 -41.60950 -40.28004 -37.88376 -35.11389 -34.23983 -32.62030 -30.59932 -27.65601 -26.87245 -25.16895 -24.65229 -22.57307 -20.38793 -19.12862 -18.80990 -18.65322 -18.08862 -17.23128 -16.84621 -16.36227 -15.77792 -15.48577 -15.31396 -14.91799 -14.66504 -14.52733 -14.37554 -13.50818 -13.38078 -13.25303 -12.90717 -12.83386 -12.54796 -12.24260 -11.84600 -11.65192 -11.49152 -11.12797 -10.91859 -10.87334 -10.65606 -9.99404 -9.62820 -8.27487 -6.31501 -0.48588 -0.18553 0.52301 1.37559 1.41838 1.51200 2.22570 2.38076 2.68774 3.06805 3.16065 3.23212 3.35377 3.71146 3.80040 4.08666 4.20961 4.27542 4.35863 4.59462 4.62785 4.73527 4.79031 4.92526 4.96972 5.07934 5.24350 5.41777 5.52879 5.67872 6.22391 6.31941 6.37125 6.75542 7.35729 8.88408 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.004768 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.092969 B = 5871.611307 C = 6436.181935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.019 3.981 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.233 1.233 7 C -0.511 4.511 8 H 0.039 0.961 9 C -0.020 4.020 10 C 0.000 4.000 11 N -0.478 5.478 12 C 0.060 3.940 13 C -0.085 4.085 14 C 0.111 3.889 15 N -0.471 5.471 16 C 0.123 3.877 17 Cl -0.017 7.017 18 C 0.063 3.937 19 F -0.118 7.118 20 C -0.069 4.069 21 C 0.025 3.975 22 H 0.265 0.735 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.178 0.822 29 H 0.186 0.814 30 H 0.067 0.933 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.582 -5.198 8.519 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.156 1.156 7 C -0.550 4.550 8 H 0.057 0.943 9 C -0.040 4.040 10 C -0.129 4.129 11 N -0.200 5.200 12 C -0.069 4.069 13 C -0.088 4.088 14 C -0.047 4.047 15 N -0.181 5.181 16 C -0.043 4.043 17 Cl 0.012 6.988 18 C 0.040 3.960 19 F -0.096 7.096 20 C -0.096 4.096 21 C -0.103 4.103 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.195 0.805 29 H 0.203 0.797 30 H 0.086 0.914 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.792 -4.416 9.102 20.467 hybrid contribution -0.392 0.392 -0.075 0.560 sum 17.400 -4.024 9.027 20.011 Atomic orbital electron populations 1.70049 1.08289 1.27990 1.52524 1.25799 0.95189 1.02849 0.94029 0.85991 0.80358 0.79086 0.78928 1.19988 1.21961 1.15626 1.21230 0.90874 0.92948 1.49908 0.94298 1.20793 0.93503 0.95582 0.94103 1.24343 0.93090 0.95877 0.99613 1.68676 1.33514 1.08115 1.09723 1.21659 0.99369 0.95897 0.89936 1.20857 0.93758 0.97743 0.96447 1.23000 1.01245 0.91805 0.88645 1.67112 1.06114 1.18621 1.26225 1.21929 0.90574 0.98968 0.92780 1.98411 1.74227 1.76760 1.49412 1.18245 0.78313 1.02098 0.97340 1.91561 1.27246 1.94786 1.96056 1.21826 0.93859 0.97098 0.96770 1.23807 0.92467 0.96860 0.97139 0.92651 0.93166 0.91755 0.91525 0.91776 0.86678 0.80528 0.79677 0.91447 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.02 1.05 5.47 84.65 0.46 1.51 16 3 Si 0.93 42.32 27.08 68.60 1.86 44.17 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.23 -9.64 5.27 99.48 0.52 -9.11 16 7 C -0.51 -26.94 9.33 25.60 0.24 -26.70 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 9 C -0.02 -0.85 2.88 -10.89 -0.03 -0.89 16 10 C 0.00 -0.01 5.61 86.34 0.48 0.48 16 11 N -0.48 -14.25 6.26 -911.60 -5.71 -19.96 16 12 C 0.06 1.34 5.00 85.56 0.43 1.77 16 13 C -0.09 -1.91 5.13 -19.78 -0.10 -2.01 16 14 C 0.11 2.77 10.15 84.67 0.86 3.63 16 15 N -0.47 -13.00 10.34 -186.55 -1.93 -14.93 16 16 C 0.12 3.16 7.28 84.76 0.62 3.77 16 17 Cl -0.02 -0.39 28.78 -2.72 -0.08 -0.47 16 18 C 0.06 1.43 7.31 22.49 0.16 1.59 16 19 F -0.12 -2.61 16.86 44.97 0.76 -1.85 16 20 C -0.07 -1.37 9.84 22.50 0.22 -1.15 16 21 C 0.03 0.84 7.53 86.41 0.65 1.49 16 22 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 23 H 0.05 2.14 7.20 -2.39 -0.02 2.13 16 24 H 0.06 2.40 6.82 -2.39 -0.02 2.39 16 25 H 0.07 2.42 7.09 -2.39 -0.02 2.41 16 26 H 0.06 1.45 7.64 -2.39 -0.02 1.43 16 27 H 0.12 1.98 8.09 -2.38 -0.02 1.96 16 28 H 0.18 4.15 7.46 -2.91 -0.02 4.13 16 29 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.07 2.21 7.74 -2.38 -0.02 2.19 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -61.52 282.91 0.17 -61.35 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.97 Total: 5.04 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.99 Total: -16.51 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -7.33 Total: -91.73 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.76 Total: -1.85 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.86 Total: 44.17 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -61.52 0.17 -61.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877624543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.404 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds