Wall clock time and date at job start Mon Mar 30 2020 01:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14771 * 247.10202 * 3 2 1 5 5 C 1.37920 * 119.84437 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.15346 * 359.74250 * 5 4 3 7 7 C 1.38346 * 120.30397 * 0.51385 * 6 5 4 8 8 C 1.50698 * 119.92209 * 179.76278 * 7 6 5 9 9 H 1.09001 * 109.46665 * 159.72605 * 8 7 6 10 10 N 1.46492 * 109.47354 * 39.72691 * 8 7 6 11 11 C 1.36940 * 120.00114 * 154.99906 * 10 8 7 12 12 H 1.07993 * 119.99751 * 359.97438 * 11 10 8 13 13 C 1.38813 * 120.00020 * 179.97438 * 11 10 8 14 14 N 1.31623 * 120.00145 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99789 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47414 * 60.00498 * 15 13 11 17 17 H 1.48506 * 109.47174 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47185 * 299.99814 * 15 13 11 19 19 C 1.53006 * 109.47184 * 279.72216 * 8 7 6 20 20 F 1.39895 * 109.46931 * 180.02562 * 19 8 7 21 21 F 1.39897 * 109.47129 * 300.00544 * 19 8 7 22 22 F 1.39900 * 109.46764 * 60.00523 * 19 8 7 23 23 C 1.37969 * 120.14902 * 359.48849 * 7 6 5 24 24 H 1.08007 * 120.07630 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.92410 * 180.02562 * 5 4 3 26 26 H 1.07998 * 119.84918 * 180.27751 * 6 5 4 27 27 H 0.97005 * 120.00153 * 334.99428 * 10 8 7 28 28 H 0.96993 * 119.99993 * 179.97438 * 14 13 11 29 29 H 1.08002 * 120.07591 * 180.27675 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2693 0.4708 1.1125 5 6 4.6484 0.4681 1.1059 6 6 5.3374 -0.0040 0.0026 7 6 4.6492 -0.4663 -1.1049 8 6 5.4082 -0.9736 -2.3038 9 1 4.7569 -1.6091 -2.9039 10 7 6.5681 -1.7480 -1.8557 11 6 7.1053 -2.7096 -2.6694 12 1 6.6734 -2.8974 -3.6412 13 6 8.2047 -3.4430 -2.2449 14 7 8.7307 -3.2145 -1.0602 15 14 8.9369 -4.7553 -3.3546 16 1 9.3894 -4.1333 -4.6249 17 1 10.0943 -5.3898 -2.6739 18 1 7.9090 -5.7864 -3.6468 19 6 5.8814 0.2122 -3.1470 20 9 6.5855 -0.2588 -4.2604 21 9 4.7736 0.9517 -3.5750 22 9 6.7173 1.0278 -2.3769 23 6 3.2695 -0.4693 -1.1119 24 1 2.7327 0.8350 1.9762 25 1 5.1920 0.8311 1.9658 26 1 6.4174 -0.0081 0.0046 27 1 6.9558 -1.5796 -0.9826 28 1 9.4987 -3.7273 -0.7635 29 1 2.7334 -0.8346 -1.9753 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879781291.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:44 Heat of formation + Delta-G solvation = -104.558183 kcal Electronic energy + Delta-G solvation = -20319.119535 eV Core-core repulsion = 16598.930473 eV Total energy + Delta-G solvation = -3720.189062 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.75375 -48.27719 -48.25452 -40.62021 -37.81535 -36.80716 -34.17159 -32.27849 -31.64951 -28.82359 -25.93278 -25.03405 -23.92519 -22.51519 -19.92818 -19.40804 -19.01478 -18.98415 -18.07079 -17.22956 -16.74341 -16.22148 -15.76357 -15.23670 -15.10648 -15.06489 -14.93666 -14.81426 -14.70771 -14.47289 -14.42996 -14.14230 -13.87616 -13.65833 -13.48305 -13.16915 -12.93630 -12.71587 -12.45069 -12.20895 -11.98906 -11.86801 -11.12567 -9.91336 -9.85998 -9.31789 -8.03937 -5.37871 -0.19356 0.29715 1.51045 1.52792 1.58519 1.60136 1.88826 2.15703 2.49790 2.81265 2.86312 3.15917 3.25055 3.36206 3.47042 3.86496 3.93588 4.06564 4.16464 4.29166 4.41034 4.58573 4.80661 4.97738 5.27621 5.38408 5.47785 5.55428 5.84049 6.13401 6.43462 7.24822 7.77815 8.07644 9.16834 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.006113 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.169071 B = 4579.630529 C = 5021.823035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.286 3.714 3 C -0.041 4.041 4 C -0.050 4.050 5 C -0.112 4.112 6 C -0.071 4.071 7 C -0.109 4.109 8 C 0.182 3.818 9 H 0.111 0.889 10 N -0.700 5.700 11 C -0.263 4.263 12 H 0.084 0.916 13 C -0.051 4.051 14 N -0.954 5.954 15 Si 0.971 3.029 16 H -0.280 1.280 17 H -0.294 1.294 18 H -0.273 1.273 19 C 0.413 3.587 20 F -0.195 7.195 21 F -0.192 7.192 22 F -0.194 7.194 23 C -0.047 4.047 24 H 0.164 0.836 25 H 0.165 0.835 26 H 0.121 0.879 27 H 0.389 0.611 28 H 0.257 0.743 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 7.636 2.949 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.029 4.029 3 C -0.044 4.044 4 C -0.071 4.071 5 C -0.130 4.130 6 C -0.091 4.091 7 C -0.110 4.110 8 C 0.067 3.933 9 H 0.129 0.871 10 N -0.337 5.337 11 C -0.393 4.393 12 H 0.102 0.898 13 C -0.246 4.246 14 N -0.601 5.601 15 Si 0.799 3.201 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.199 1.199 19 C 0.354 3.646 20 F -0.176 7.176 21 F -0.174 7.174 22 F -0.176 7.176 23 C -0.068 4.068 24 H 0.182 0.818 25 H 0.182 0.818 26 H 0.139 0.861 27 H 0.225 0.775 28 H 0.066 0.934 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.485 7.478 2.824 12.404 hybrid contribution 1.512 -0.445 -0.664 1.710 sum -7.973 7.033 2.161 10.849 Atomic orbital electron populations 1.81262 1.13051 1.10475 1.08971 1.25694 0.92478 0.92271 0.92445 1.15883 0.83536 1.07592 0.97426 1.21517 0.94157 0.94759 0.96627 1.21350 0.93794 0.99276 0.98560 1.21440 1.00877 0.93898 0.92843 1.19502 0.93626 1.02160 0.95716 1.20356 0.90497 0.89040 0.93415 0.87126 1.42569 1.31958 1.39648 1.19531 1.19566 1.09902 1.11000 0.98879 0.89820 1.25542 0.98862 1.02002 0.98178 1.69768 1.25736 1.44376 1.20180 0.85269 0.77694 0.79096 0.78008 1.20635 1.21999 1.19913 1.23207 0.75224 0.86389 0.79764 1.93112 1.80251 1.88513 1.55771 1.93101 1.53478 1.79848 1.91001 1.93072 1.73519 1.75604 1.75376 1.21047 0.92394 0.95722 0.97660 0.81806 0.81750 0.86112 0.77529 0.93404 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.73 18.54 19.01 0.35 -12.37 15 2 C 0.29 6.65 15.33 88.33 1.35 8.01 15 3 C -0.04 -0.86 5.73 -21.36 -0.12 -0.98 15 4 C -0.05 -0.86 9.76 22.54 0.22 -0.64 15 5 C -0.11 -2.14 10.03 22.23 0.22 -1.92 15 6 C -0.07 -1.92 8.30 22.33 0.19 -1.73 15 7 C -0.11 -3.15 4.63 -19.90 -0.09 -3.24 15 8 C 0.18 6.42 2.55 44.25 0.11 6.53 15 9 H 0.11 3.66 7.94 -2.39 -0.02 3.65 15 10 N -0.70 -31.26 4.98 -326.51 -1.63 -32.88 15 11 C -0.26 -13.24 9.21 84.03 0.77 -12.47 15 12 H 0.08 4.07 7.83 -2.91 -0.02 4.05 15 13 C -0.05 -2.71 5.50 84.86 0.47 -2.25 15 14 N -0.95 -53.34 13.06 21.65 0.28 -53.05 15 15 Si 0.97 43.14 29.55 68.60 2.03 45.16 15 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 17 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 19 C 0.41 15.03 2.82 71.98 0.20 15.24 15 20 F -0.19 -8.01 16.55 44.97 0.74 -7.26 15 21 F -0.19 -6.23 17.02 44.97 0.77 -5.46 15 22 F -0.19 -7.33 16.20 44.97 0.73 -6.60 15 23 C -0.05 -1.13 9.37 22.54 0.21 -0.92 15 24 H 0.16 1.76 8.06 -2.91 -0.02 1.74 15 25 H 0.16 2.16 8.06 -2.91 -0.02 2.14 15 26 H 0.12 3.68 6.77 -2.91 -0.02 3.66 15 27 H 0.39 18.24 6.04 -92.70 -0.56 17.68 15 28 H 0.26 14.04 8.31 -92.71 -0.77 13.27 15 29 H 0.15 3.06 8.03 -2.91 -0.02 3.04 15 Total: -1.00 -60.09 281.49 7.47 -52.62 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.66 Total: 14.22 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 3.54 Total: 5.64 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -0.99 Total: -98.31 kcal Atomic # 9 Polarization: -21.57 SS G_CDS: 2.24 Total: -19.33 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -60.09 7.47 -52.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879781291.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.934 kcal (2) G-P(sol) polarization free energy of solvation -60.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds