Wall clock time and date at job start Mon Mar 30 2020 01:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15093 * 71.01680 * 3 2 1 5 5 C 1.37930 * 119.84451 * 180.24818 * 4 3 2 6 6 C 1.38378 * 120.15194 * 359.75350 * 5 4 3 7 7 C 1.38343 * 120.30736 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.92437 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.46829 * 199.97840 * 8 7 6 10 10 N 1.46497 * 109.46732 * 319.97522 * 8 7 6 11 11 C 1.36944 * 119.99757 * 205.00018 * 10 8 7 12 12 H 1.07999 * 119.99760 * 0.02562 * 11 10 8 13 13 C 1.38804 * 120.00117 * 180.02562 * 11 10 8 14 14 N 1.31620 * 120.00130 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00128 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47325 * 89.99720 * 15 13 11 17 17 H 1.48498 * 109.47082 * 209.99927 * 15 13 11 18 18 H 1.48504 * 109.46675 * 329.99527 * 15 13 11 19 19 C 1.52998 * 109.47212 * 79.97743 * 8 7 6 20 20 F 1.39904 * 109.47362 * 59.99956 * 19 8 7 21 21 F 1.39899 * 109.46852 * 179.97438 * 19 8 7 22 22 F 1.39899 * 109.47288 * 299.99867 * 19 8 7 23 23 C 1.37969 * 120.14819 * 359.97438 * 7 6 5 24 24 H 1.08002 * 120.07851 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.92141 * 179.71694 * 5 4 3 26 26 H 1.08006 * 119.84829 * 179.97438 * 6 5 4 27 27 H 0.96998 * 120.00225 * 25.00593 * 10 8 7 28 28 H 0.97003 * 120.00056 * 180.02562 * 14 13 11 29 29 H 1.08002 * 120.07258 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.3919 -1.1419 5 6 4.6489 -0.3937 -1.1332 6 6 5.3374 -0.0030 0.0018 7 6 4.6487 0.3923 1.1346 8 6 5.4072 0.8167 2.3657 9 1 4.7544 0.7492 3.2359 10 7 6.5639 -0.0624 2.5537 11 6 7.0985 -0.2328 3.8029 12 1 6.6671 0.2806 4.6495 13 6 8.1948 -1.0653 3.9810 14 7 8.7083 -1.2295 5.1817 15 14 8.9415 -1.9528 2.5165 16 1 9.9980 -1.1040 1.9094 17 1 9.5360 -3.2370 2.9665 18 1 7.8839 -2.2228 1.5096 19 6 5.8856 2.2602 2.1977 20 9 4.7810 3.0997 2.0181 21 9 6.5893 2.6543 3.3408 22 9 6.7236 2.3468 1.0808 23 6 3.2690 0.4000 1.1394 24 1 2.7335 -0.6974 -2.0282 25 1 5.1927 -0.7014 -2.0142 26 1 6.4174 -0.0068 0.0033 27 1 6.9512 -0.5237 1.7933 28 1 9.4747 -1.8110 5.3061 29 1 2.7326 0.7093 2.0243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879781292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:46 Heat of formation + Delta-G solvation = -83.943247 kcal Electronic energy + Delta-G solvation = -20398.064865 eV Core-core repulsion = 16678.769734 eV Total energy + Delta-G solvation = -3719.295131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.31845 -46.89415 -46.73718 -39.72037 -36.75373 -35.54880 -32.55616 -31.42298 -30.62549 -27.71843 -24.20542 -23.94343 -22.53888 -21.34881 -18.90436 -18.01739 -17.73929 -17.51004 -16.67442 -16.35654 -15.65606 -14.64538 -14.51115 -14.11094 -14.05107 -13.74193 -13.61141 -13.28230 -13.23393 -13.09386 -13.01107 -12.94128 -12.78280 -12.56991 -12.32413 -12.05583 -11.61090 -11.42310 -11.09634 -11.03630 -10.42105 -9.84707 -9.37711 -9.06748 -8.94171 -7.76932 -6.05452 -3.48196 0.67573 1.14786 2.55064 2.82383 3.17840 3.21614 3.29210 3.49003 3.73438 3.80586 4.33050 4.38664 4.51961 4.66611 4.76131 4.88591 5.04863 5.16525 5.24944 5.39548 5.44020 5.55263 5.77731 5.85935 6.11304 6.20589 6.41217 6.66518 7.36702 7.59543 8.08691 8.81265 9.51941 9.62671 11.10127 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.006934 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.971043 B = 4037.238607 C = 4642.966922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.262 3.738 3 C -0.036 4.036 4 C -0.069 4.069 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.091 4.091 8 C 0.186 3.814 9 H 0.111 0.889 10 N -0.712 5.712 11 C -0.271 4.271 12 H 0.102 0.898 13 C 0.025 3.975 14 N -0.912 5.912 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.412 3.588 20 F -0.202 7.202 21 F -0.174 7.174 22 F -0.193 7.193 23 C -0.046 4.046 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.372 0.628 28 H 0.266 0.734 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 2.771 -11.820 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.053 4.053 3 C -0.039 4.039 4 C -0.089 4.089 5 C -0.138 4.138 6 C -0.086 4.086 7 C -0.093 4.093 8 C 0.070 3.930 9 H 0.129 0.871 10 N -0.350 5.350 11 C -0.400 4.400 12 H 0.120 0.880 13 C -0.174 4.174 14 N -0.556 5.556 15 Si 0.706 3.294 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.353 3.647 20 F -0.184 7.184 21 F -0.155 7.155 22 F -0.174 7.174 23 C -0.067 4.067 24 H 0.150 0.850 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.208 0.792 28 H 0.076 0.924 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.602 2.727 -11.500 14.618 hybrid contribution 1.316 -0.338 -0.924 1.643 sum -7.285 2.389 -12.424 14.600 Atomic orbital electron populations 1.81236 1.12071 1.09106 1.07649 1.25681 0.92600 0.93428 0.93584 1.15883 0.84199 1.07437 0.96387 1.21153 0.94344 0.96944 0.96501 1.21058 0.93538 1.00502 0.98664 1.21357 1.01062 0.94217 0.91920 1.19747 0.93251 1.00986 0.95278 1.20175 0.90959 0.85602 0.96262 0.87109 1.42848 1.32404 1.50914 1.08862 1.19089 1.11040 1.25136 0.84687 0.88045 1.24685 0.97568 0.98868 0.96293 1.69688 1.25192 1.40368 1.20322 0.86678 0.79771 0.80069 0.82894 1.20348 1.21018 1.19831 1.23170 0.75347 0.92646 0.73536 1.93094 1.54411 1.75597 1.95328 1.93186 1.79621 1.92280 1.50460 1.93071 1.73263 1.97018 1.54090 1.21016 0.93109 0.95596 0.97019 0.85028 0.84689 0.84913 0.79192 0.92387 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.03 18.54 41.84 0.78 -5.26 15 2 C 0.26 3.21 15.33 -22.47 -0.34 2.86 15 3 C -0.04 -0.40 5.73 -106.93 -0.61 -1.01 15 4 C -0.07 -0.65 9.76 -39.17 -0.38 -1.04 15 5 C -0.12 -1.20 10.03 -39.64 -0.40 -1.59 15 6 C -0.07 -0.86 8.29 -39.49 -0.33 -1.18 15 7 C -0.09 -1.29 4.63 -104.68 -0.48 -1.77 15 8 C 0.19 3.18 2.55 -69.08 -0.18 3.00 15 9 H 0.11 1.81 7.94 -51.93 -0.41 1.40 15 10 N -0.71 -14.87 4.79 -54.56 -0.26 -15.13 15 11 C -0.27 -6.91 9.69 -15.06 -0.15 -7.05 15 12 H 0.10 2.79 8.06 -52.49 -0.42 2.36 15 13 C 0.02 0.66 5.50 -17.43 -0.10 0.57 15 14 N -0.91 -26.61 13.97 55.49 0.78 -25.84 15 15 Si 0.88 19.94 27.74 -169.99 -4.71 15.23 15 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 18 H -0.27 -5.63 6.52 56.52 0.37 -5.27 15 19 C 0.41 7.34 2.82 37.16 0.10 7.45 15 20 F -0.20 -3.28 17.02 2.25 0.04 -3.25 15 21 F -0.17 -3.59 16.55 2.25 0.04 -3.55 15 22 F -0.19 -3.44 16.17 2.25 0.04 -3.41 15 23 C -0.05 -0.56 9.37 -39.17 -0.37 -0.93 15 24 H 0.13 0.93 8.06 -52.49 -0.42 0.51 15 25 H 0.14 0.99 8.06 -52.48 -0.42 0.57 15 26 H 0.13 1.77 6.77 -52.48 -0.36 1.42 15 27 H 0.37 7.50 3.92 -40.82 -0.16 7.34 15 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 29 H 0.14 1.47 8.03 -52.49 -0.42 1.05 15 LS Contribution 278.35 15.07 4.19 4.19 Total: -1.00 -29.28 278.35 -4.13 -33.41 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.79 Total: 4.29 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.23 Total: -0.69 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 1.29 Total: -46.23 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 0.11 Total: -10.20 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.28 -4.13 -33.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879781292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.533 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds