Wall clock time and date at job start Mon Mar 30 2020 01:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15093 * 71.01680 * 3 2 1 5 5 C 1.37930 * 119.84451 * 180.24818 * 4 3 2 6 6 C 1.38378 * 120.15194 * 359.75350 * 5 4 3 7 7 C 1.38343 * 120.30736 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.92437 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.46829 * 199.97840 * 8 7 6 10 10 N 1.46497 * 109.46732 * 319.97522 * 8 7 6 11 11 C 1.36944 * 119.99757 * 205.00018 * 10 8 7 12 12 H 1.07999 * 119.99760 * 0.02562 * 11 10 8 13 13 C 1.38804 * 120.00117 * 180.02562 * 11 10 8 14 14 N 1.31620 * 120.00130 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00128 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47325 * 89.99720 * 15 13 11 17 17 H 1.48498 * 109.47082 * 209.99927 * 15 13 11 18 18 H 1.48504 * 109.46675 * 329.99527 * 15 13 11 19 19 C 1.52998 * 109.47212 * 79.97743 * 8 7 6 20 20 F 1.39904 * 109.47362 * 59.99956 * 19 8 7 21 21 F 1.39899 * 109.46852 * 179.97438 * 19 8 7 22 22 F 1.39899 * 109.47288 * 299.99867 * 19 8 7 23 23 C 1.37969 * 120.14819 * 359.97438 * 7 6 5 24 24 H 1.08002 * 120.07851 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.92141 * 179.71694 * 5 4 3 26 26 H 1.08006 * 119.84829 * 179.97438 * 6 5 4 27 27 H 0.96998 * 120.00225 * 25.00593 * 10 8 7 28 28 H 0.97003 * 120.00056 * 180.02562 * 14 13 11 29 29 H 1.08002 * 120.07258 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.3919 -1.1419 5 6 4.6489 -0.3937 -1.1332 6 6 5.3374 -0.0030 0.0018 7 6 4.6487 0.3923 1.1346 8 6 5.4072 0.8167 2.3657 9 1 4.7544 0.7492 3.2359 10 7 6.5639 -0.0624 2.5537 11 6 7.0985 -0.2328 3.8029 12 1 6.6671 0.2806 4.6495 13 6 8.1948 -1.0653 3.9810 14 7 8.7083 -1.2295 5.1817 15 14 8.9415 -1.9528 2.5165 16 1 9.9980 -1.1040 1.9094 17 1 9.5360 -3.2370 2.9665 18 1 7.8839 -2.2228 1.5096 19 6 5.8856 2.2602 2.1977 20 9 4.7810 3.0997 2.0181 21 9 6.5893 2.6543 3.3408 22 9 6.7236 2.3468 1.0808 23 6 3.2690 0.4000 1.1394 24 1 2.7335 -0.6974 -2.0282 25 1 5.1927 -0.7014 -2.0142 26 1 6.4174 -0.0068 0.0033 27 1 6.9512 -0.5237 1.7933 28 1 9.4747 -1.8110 5.3061 29 1 2.7326 0.7093 2.0243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879781292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:46 Heat of formation + Delta-G solvation = -100.987432 kcal Electronic energy + Delta-G solvation = -20398.803956 eV Core-core repulsion = 16678.769734 eV Total energy + Delta-G solvation = -3720.034222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.80506 -48.32827 -48.29843 -40.68517 -37.90045 -36.93224 -34.24401 -32.33870 -32.08377 -29.12210 -25.73461 -25.08866 -23.80247 -22.60065 -20.32421 -19.48651 -19.22005 -19.01570 -18.09998 -17.29528 -16.84896 -16.18286 -15.91265 -15.26449 -15.14699 -15.08777 -14.97738 -14.77483 -14.74986 -14.50947 -14.46166 -14.17263 -14.01630 -13.73924 -13.62261 -13.51266 -13.07216 -12.75979 -12.48387 -12.20306 -12.03356 -11.80574 -11.18239 -9.95297 -9.91567 -9.63886 -8.08125 -5.50670 -0.23562 0.25385 1.38424 1.43362 1.49728 1.58815 1.85054 2.10409 2.44953 2.76373 2.81530 3.01121 3.17435 3.20121 3.37184 3.71837 3.89161 3.93458 4.11128 4.22628 4.35879 4.53699 4.75546 4.94331 5.25016 5.32578 5.45209 5.67058 5.80105 6.10881 6.42298 6.91865 7.57113 7.76729 9.10974 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.006934 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.971043 B = 4037.238607 C = 4642.966922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.284 3.716 3 C -0.038 4.038 4 C -0.049 4.049 5 C -0.109 4.109 6 C -0.078 4.078 7 C -0.112 4.112 8 C 0.187 3.813 9 H 0.113 0.887 10 N -0.717 5.717 11 C -0.251 4.251 12 H 0.068 0.932 13 C -0.045 4.045 14 N -0.969 5.969 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.236 1.236 19 C 0.417 3.583 20 F -0.190 7.190 21 F -0.195 7.195 22 F -0.190 7.190 23 C -0.046 4.046 24 H 0.165 0.835 25 H 0.170 0.830 26 H 0.127 0.873 27 H 0.378 0.622 28 H 0.262 0.738 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 2.278 -15.152 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.031 4.031 3 C -0.042 4.042 4 C -0.069 4.069 5 C -0.126 4.126 6 C -0.097 4.097 7 C -0.113 4.113 8 C 0.073 3.927 9 H 0.130 0.870 10 N -0.358 5.358 11 C -0.381 4.381 12 H 0.086 0.914 13 C -0.238 4.238 14 N -0.617 5.617 15 Si 0.767 3.233 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.160 1.160 19 C 0.358 3.642 20 F -0.172 7.172 21 F -0.176 7.176 22 F -0.172 7.172 23 C -0.067 4.067 24 H 0.183 0.817 25 H 0.187 0.813 26 H 0.145 0.855 27 H 0.215 0.785 28 H 0.071 0.929 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.605 2.272 -14.887 17.862 hybrid contribution 1.474 -0.054 0.065 1.476 sum -8.132 2.218 -14.822 17.051 Atomic orbital electron populations 1.81272 1.13161 1.10475 1.08831 1.25725 0.92537 0.92312 0.92492 1.15897 0.83492 1.08013 0.96793 1.21556 0.94316 0.94318 0.96692 1.21383 0.93698 0.98968 0.98588 1.21484 1.01060 0.94598 0.92546 1.19457 0.93668 1.03631 0.94523 1.20289 0.89895 0.84094 0.98468 0.86982 1.42681 1.33796 1.52027 1.07250 1.18967 1.10225 1.23283 0.85643 0.91383 1.25495 0.98595 1.00600 0.99124 1.69867 1.26375 1.42367 1.23046 0.85638 0.79547 0.78070 0.80093 1.20282 1.21977 1.16000 1.22882 0.75367 0.92948 0.72999 1.93115 1.53620 1.75217 1.95202 1.93154 1.80213 1.92528 1.51726 1.93074 1.73278 1.97043 1.53774 1.21047 0.92448 0.95322 0.97862 0.81737 0.81269 0.85500 0.78502 0.92897 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.21 18.54 19.00 0.35 -11.86 15 2 C 0.28 6.18 15.33 88.33 1.35 7.53 15 3 C -0.04 -0.72 5.73 -21.36 -0.12 -0.84 15 4 C -0.05 -0.68 9.76 22.54 0.22 -0.46 15 5 C -0.11 -1.63 10.03 22.23 0.22 -1.41 15 6 C -0.08 -1.74 8.29 22.33 0.19 -1.55 15 7 C -0.11 -2.89 4.63 -19.90 -0.09 -2.98 15 8 C 0.19 6.23 2.55 44.25 0.11 6.34 15 9 H 0.11 3.67 7.94 -2.39 -0.02 3.65 15 10 N -0.72 -29.44 4.79 -326.52 -1.56 -31.00 15 11 C -0.25 -13.05 9.69 84.03 0.81 -12.23 15 12 H 0.07 3.91 8.06 -2.91 -0.02 3.89 15 13 C -0.04 -2.45 5.50 84.86 0.47 -1.98 15 14 N -0.97 -58.71 13.97 21.65 0.30 -58.40 15 15 Si 0.94 40.91 27.74 68.60 1.90 42.81 15 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 15 18 H -0.24 -8.73 6.52 99.48 0.65 -8.08 15 19 C 0.42 14.51 2.82 71.98 0.20 14.71 15 20 F -0.19 -5.91 17.02 44.97 0.77 -5.14 15 21 F -0.19 -8.11 16.55 44.97 0.74 -7.36 15 22 F -0.19 -6.52 16.17 44.97 0.73 -5.79 15 23 C -0.05 -1.00 9.37 22.54 0.21 -0.78 15 24 H 0.17 1.31 8.06 -2.91 -0.02 1.29 15 25 H 0.17 1.43 8.06 -2.91 -0.02 1.41 15 26 H 0.13 2.99 6.77 -2.91 -0.02 2.97 15 27 H 0.38 14.50 3.92 -92.71 -0.36 14.14 15 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 29 H 0.14 2.84 8.03 -2.91 -0.02 2.82 15 Total: -1.00 -65.19 278.35 7.60 -57.58 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.80 Total: 12.84 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 3.58 Total: 6.33 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -0.91 Total: -101.27 kcal Atomic # 9 Polarization: -20.53 SS G_CDS: 2.24 Total: -18.29 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.90 Total: 42.81 kcal Total: -65.19 7.60 -57.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879781292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.404 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds