Wall clock time and date at job start Mon Mar 30 2020 01:22:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31155 * 1
3 3 Cl 1.73602 * 120.00279 * 2 1
4 4 C 1.50703 * 119.99984 * 179.97438 * 2 1 3
5 5 N 1.46491 * 109.47207 * 95.00270 * 4 2 1
6 6 C 1.35317 * 125.87029 * 125.29585 * 5 4 2
7 7 C 1.35352 * 106.17693 * 180.18381 * 6 5 4
8 8 C 1.50700 * 126.75361 * 179.84844 * 7 6 5
9 9 N 1.46498 * 109.46769 * 94.71485 * 8 7 6
10 10 C 1.34777 * 119.99828 * 179.72341 * 9 8 7
11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 8
12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 8
13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9
14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9
15 15 N 1.30664 * 120.00145 * 0.02562 * 14 12 10
16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10
17 17 H 1.48506 * 109.47257 * 0.02562 * 16 14 12
18 18 H 1.48503 * 109.46768 * 120.00068 * 16 14 12
19 19 H 1.48498 * 109.47283 * 240.00320 * 16 14 12
20 20 N 1.33772 * 106.49634 * 359.59642 * 7 6 5
21 21 N 1.28636 * 108.88627 * 0.25926 * 20 7 6
22 22 H 1.07997 * 120.00168 * 179.97438 * 1 2 3
23 23 H 1.08000 * 120.00045 * 0.02562 * 1 2 3
24 24 H 1.08997 * 109.46964 * 335.00257 * 4 2 1
25 25 H 1.08999 * 109.47194 * 215.00188 * 4 2 1
26 26 H 1.08002 * 126.91295 * 0.03783 * 6 5 4
27 27 H 1.09004 * 109.47210 * 334.71843 * 8 7 6
28 28 H 1.08994 * 109.47121 * 214.71813 * 8 7 6
29 29 H 0.97001 * 120.00384 * 0.02562 * 9 8 7
30 30 H 0.96996 * 120.00325 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3116 0.0000 0.0000
3 17 2.1796 1.5034 0.0000
4 6 2.0651 -1.3051 0.0006
5 7 2.4135 -1.6684 -1.3751
6 6 3.6570 -1.9457 -1.8312
7 6 3.5219 -2.2242 -3.1489
8 6 4.6225 -2.5921 -4.1103
9 7 4.7202 -4.0507 -4.2055
10 6 5.6381 -4.6131 -5.0165
11 8 6.3891 -3.9093 -5.6657
12 6 5.7316 -6.0704 -5.1164
13 1 5.0649 -6.6951 -4.5405
14 6 6.6851 -6.6548 -5.9595
15 7 7.4915 -5.8991 -6.6566
16 14 6.8050 -8.5147 -6.0863
17 1 5.7875 -9.1378 -5.2020
18 1 6.5616 -8.9317 -7.4907
19 1 8.1605 -8.9531 -5.6676
20 7 2.2184 -2.1140 -3.4288
21 7 1.5889 -1.7835 -2.3568
22 1 -0.5400 -0.9353 -0.0004
23 1 -0.5400 0.9353 -0.0004
24 1 1.4401 -2.0852 0.4352
25 1 2.9757 -1.1986 0.5900
26 1 4.5732 -1.9428 -1.2595
27 1 5.5689 -2.1873 -3.7514
28 1 4.3997 -2.1778 -5.0935
29 1 4.1213 -4.6118 -3.6883
30 1 8.1521 -6.3038 -7.2403
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881426560.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:22:35
Heat of formation + Delta-G solvation = 74.453830 kcal
Electronic energy + Delta-G solvation = -17312.546879 eV
Core-core repulsion = 14171.837002 eV
Total energy + Delta-G solvation = -3140.709877 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.062 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-43.20134 -37.60030 -37.21436 -35.70397 -33.70705 -32.62132 -32.29054 -30.69902
-27.79299 -26.97351 -25.01870 -22.33757 -21.44291 -20.44342 -19.63135 -17.73300
-17.00512 -16.59142 -16.18032 -15.30774 -14.88189 -14.72907 -14.38428 -13.91934
-13.45754 -13.18581 -12.82293 -12.61432 -12.38983 -12.09612 -11.61052 -11.43937
-11.33671 -11.11193 -10.95907 -10.60643 -10.43663 -10.18211 -10.09354 -9.81063
-9.19096 -8.82743 -7.57393 -7.47848 -6.15334 -4.60264 1.08063 1.58777
1.71762 2.43292 2.62781 3.15784 3.23971 3.28628 3.78810 4.14031
4.16472 4.50343 4.62367 4.65465 4.95996 5.05385 5.16838 5.28347
5.43716 5.52866 5.63511 5.85674 6.11300 6.45110 6.50140 6.54902
7.47183 7.95380 8.10346 8.36723 8.59462 9.06094 9.56080 10.63093
10.81492
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.047305 B = 0.003237 C = 0.003146
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 591.767195 B = 8647.246802 C = 8897.353132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.110 4.110
3 Cl -0.074 7.074
4 C 0.160 3.840
5 N -0.299 5.299
6 C -0.035 4.035
7 C -0.016 4.016
8 C 0.216 3.784
9 N -0.761 5.761
10 C 0.556 3.444
11 O -0.580 6.580
12 C -0.543 4.543
13 H 0.068 0.932
14 C 0.087 3.913
15 N -0.768 5.768
16 Si 0.908 3.092
17 H -0.264 1.264
18 H -0.276 1.276
19 H -0.277 1.277
20 N -0.251 5.251
21 N -0.087 5.087
22 H 0.130 0.870
23 H 0.120 0.880
24 H 0.119 0.881
25 H 0.120 0.880
26 H 0.192 0.808
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.381 0.619
30 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.532 9.841 17.825 23.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.138 4.138
3 Cl -0.046 7.046
4 C 0.039 3.961
5 N -0.093 5.093
6 C -0.185 4.185
7 C -0.154 4.154
8 C 0.089 3.911
9 N -0.418 5.418
10 C 0.360 3.640
11 O -0.463 6.463
12 C -0.580 4.580
13 H 0.086 0.914
14 C -0.132 4.132
15 N -0.397 5.397
16 Si 0.732 3.268
17 H -0.188 1.188
18 H -0.202 1.202
19 H -0.202 1.202
20 N -0.118 5.118
21 N -0.067 5.067
22 H 0.148 0.852
23 H 0.139 0.861
24 H 0.137 0.863
25 H 0.138 0.862
26 H 0.209 0.791
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.212 0.788
30 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -12.195 10.615 16.779 23.301
hybrid contribution 0.874 -1.014 0.750 1.534
sum -11.321 9.601 17.529 22.969
Atomic orbital electron populations
1.24274 0.93644 1.04613 0.93185 1.23072 0.94202 0.87525 1.08960
1.98409 1.77652 1.31504 1.96995 1.21055 1.02823 0.93743 0.78505
1.47287 1.06157 1.45731 1.10136 1.23485 0.90237 1.08189 0.96622
1.22360 0.93887 1.05438 0.93716 1.19060 0.91388 0.85260 0.95351
1.46158 1.41183 1.03280 1.51140 1.18225 0.78613 0.89165 0.77957
1.90605 1.44426 1.64092 1.47177 1.20899 1.19547 0.89927 1.27652
0.91416 1.25704 0.94217 0.99441 0.93863 1.70027 1.14406 1.35887
1.19342 0.86320 0.78573 0.83279 0.78588 1.18820 1.20161 1.20202
1.75128 1.04863 1.14508 1.17340 1.78264 1.18948 1.18828 0.90626
0.85172 0.86138 0.86317 0.86202 0.79096 0.91443 0.91402 0.78793
0.92173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.70 14.02 28.97 0.41 -0.30 16
2 C -0.11 -0.81 5.87 -36.07 -0.21 -1.02 16
3 Cl -0.07 -0.64 28.99 -51.86 -1.50 -2.15 16
4 C 0.16 1.09 6.70 -5.20 -0.03 1.06 16
5 N -0.30 -3.50 3.43 -62.45 -0.21 -3.71 16
6 C -0.03 -0.45 11.50 -17.04 -0.20 -0.64 16
7 C -0.02 -0.28 6.61 -82.78 -0.55 -0.82 16
8 C 0.22 4.31 6.23 -5.19 -0.03 4.28 16
9 N -0.76 -17.54 5.54 -62.90 -0.35 -17.89 16
10 C 0.56 16.02 7.75 -12.99 -0.10 15.92 16
11 O -0.58 -18.91 15.02 5.20 0.08 -18.83 16
12 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16
13 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16
14 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16
15 N -0.77 -23.18 11.83 55.55 0.66 -22.53 16
16 Si 0.91 20.30 29.56 -169.99 -5.02 15.27 16
17 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16
18 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16
19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
20 N -0.25 -4.53 12.41 33.29 0.41 -4.11 16
21 N -0.09 -1.33 12.92 60.35 0.78 -0.55 16
22 H 0.13 0.60 7.99 -52.49 -0.42 0.18 16
23 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16
24 H 0.12 0.54 7.99 -51.93 -0.41 0.13 16
25 H 0.12 0.54 8.07 -51.93 -0.42 0.12 16
26 H 0.19 1.79 8.06 -52.49 -0.42 1.37 16
27 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
28 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16
29 H 0.38 8.03 8.44 -40.82 -0.34 7.68 16
30 H 0.27 7.29 8.29 -40.82 -0.34 6.96 16
LS Contribution 295.78 15.07 4.46 4.46
Total: -1.00 -37.04 295.78 -4.69 -41.74
By element:
Atomic # 1 Polarization: 6.16 SS G_CDS: -2.83 Total: 3.33 kcal
Atomic # 6 Polarization: 6.12 SS G_CDS: -1.15 Total: 4.97 kcal
Atomic # 7 Polarization: -50.08 SS G_CDS: 1.29 Total: -48.79 kcal
Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal
Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal
Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -37.04 -4.69 -41.74 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881426560.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.191 kcal
(2) G-P(sol) polarization free energy of solvation -37.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds