Wall clock time and date at job start Mon Mar 30 2020 01:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31155 * 1 3 3 Cl 1.73602 * 120.00279 * 2 1 4 4 C 1.50703 * 119.99984 * 179.97438 * 2 1 3 5 5 N 1.46491 * 109.47207 * 95.00270 * 4 2 1 6 6 C 1.35317 * 125.87029 * 125.29585 * 5 4 2 7 7 C 1.35352 * 106.17693 * 180.18381 * 6 5 4 8 8 C 1.50700 * 126.75361 * 179.84844 * 7 6 5 9 9 N 1.46498 * 109.46769 * 94.71485 * 8 7 6 10 10 C 1.34777 * 119.99828 * 179.72341 * 9 8 7 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 8 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 8 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30664 * 120.00145 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47257 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47283 * 240.00320 * 16 14 12 20 20 N 1.33772 * 106.49634 * 359.59642 * 7 6 5 21 21 N 1.28636 * 108.88627 * 0.25926 * 20 7 6 22 22 H 1.07997 * 120.00168 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.00045 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46964 * 335.00257 * 4 2 1 25 25 H 1.08999 * 109.47194 * 215.00188 * 4 2 1 26 26 H 1.08002 * 126.91295 * 0.03783 * 6 5 4 27 27 H 1.09004 * 109.47210 * 334.71843 * 8 7 6 28 28 H 1.08994 * 109.47121 * 214.71813 * 8 7 6 29 29 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 30 30 H 0.96996 * 120.00325 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.4135 -1.6684 -1.3751 6 6 3.6570 -1.9457 -1.8312 7 6 3.5219 -2.2242 -3.1489 8 6 4.6225 -2.5921 -4.1103 9 7 4.7202 -4.0507 -4.2055 10 6 5.6381 -4.6131 -5.0165 11 8 6.3891 -3.9093 -5.6657 12 6 5.7316 -6.0704 -5.1164 13 1 5.0649 -6.6951 -4.5405 14 6 6.6851 -6.6548 -5.9595 15 7 7.4915 -5.8991 -6.6566 16 14 6.8050 -8.5147 -6.0863 17 1 5.7875 -9.1378 -5.2020 18 1 6.5616 -8.9317 -7.4907 19 1 8.1605 -8.9531 -5.6676 20 7 2.2184 -2.1140 -3.4288 21 7 1.5889 -1.7835 -2.3568 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.4401 -2.0852 0.4352 25 1 2.9757 -1.1986 0.5900 26 1 4.5732 -1.9428 -1.2595 27 1 5.5689 -2.1873 -3.7514 28 1 4.3997 -2.1778 -5.0935 29 1 4.1213 -4.6118 -3.6883 30 1 8.1521 -6.3038 -7.2403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881426560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:34 Heat of formation + Delta-G solvation = 45.810730 kcal Electronic energy + Delta-G solvation = -17313.788937 eV Core-core repulsion = 14171.837002 eV Total energy + Delta-G solvation = -3141.951935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.30471 -39.35986 -38.14909 -36.56083 -35.40173 -34.46856 -33.43356 -32.18362 -29.01539 -28.38712 -26.78875 -23.29710 -22.67001 -21.69942 -21.10048 -19.39346 -18.28066 -17.59922 -17.34867 -16.77348 -16.19518 -16.00081 -15.91980 -15.24367 -15.15328 -14.53859 -14.08001 -13.54485 -13.43663 -13.27240 -13.10162 -12.93653 -12.74154 -12.63292 -12.53771 -12.08223 -11.96030 -11.83825 -11.12751 -10.92307 -10.45009 -10.33190 -9.79050 -9.49018 -8.26898 -6.83331 0.44684 0.64369 1.16969 1.33664 1.42620 1.43596 1.61007 1.67397 2.28194 2.49232 3.12946 3.29801 3.38803 3.62586 3.74109 3.90844 4.15843 4.22061 4.44462 4.63638 4.69712 4.92706 4.99360 5.05077 5.12949 5.34614 5.58529 5.88849 6.18223 6.27665 6.89022 7.44693 7.53303 8.49974 8.69187 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.047305 B = 0.003237 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.767195 B = 8647.246802 C = 8897.353132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.130 4.130 3 Cl -0.093 7.093 4 C 0.150 3.850 5 N -0.283 5.283 6 C -0.008 4.008 7 C -0.045 4.045 8 C 0.224 3.776 9 N -0.748 5.748 10 C 0.541 3.459 11 O -0.630 6.630 12 C -0.571 4.571 13 H 0.085 0.915 14 C 0.028 3.972 15 N -0.821 5.821 16 Si 0.999 3.001 17 H -0.248 1.248 18 H -0.270 1.270 19 H -0.266 1.266 20 N -0.294 5.294 21 N -0.096 5.096 22 H 0.147 0.853 23 H 0.127 0.873 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.230 0.770 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.392 0.608 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 8.490 20.186 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.157 4.157 3 Cl -0.065 7.065 4 C 0.031 3.969 5 N -0.076 5.076 6 C -0.159 4.159 7 C -0.184 4.184 8 C 0.098 3.902 9 N -0.403 5.403 10 C 0.345 3.655 11 O -0.517 6.517 12 C -0.608 4.608 13 H 0.104 0.896 14 C -0.187 4.187 15 N -0.450 5.450 16 Si 0.819 3.181 17 H -0.171 1.171 18 H -0.195 1.195 19 H -0.191 1.191 20 N -0.161 5.161 21 N -0.075 5.075 22 H 0.165 0.835 23 H 0.145 0.855 24 H 0.166 0.834 25 H 0.167 0.833 26 H 0.247 0.753 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.225 0.775 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.159 9.289 19.203 25.064 hybrid contribution 1.035 -0.481 0.138 1.150 sum -12.124 8.808 19.341 24.467 Atomic orbital electron populations 1.24573 0.93392 1.05764 0.90622 1.23166 0.94556 0.86983 1.11000 1.98407 1.78096 1.32824 1.97192 1.21634 1.05032 0.94277 0.75977 1.47686 1.05306 1.43462 1.11193 1.23879 0.91719 1.05136 0.95197 1.21886 0.92970 1.08612 0.94887 1.18883 0.93117 0.83050 0.95153 1.45817 1.39768 1.04974 1.49699 1.18589 0.78995 0.89743 0.78181 1.90558 1.46624 1.65162 1.49353 1.21424 1.20499 0.90361 1.28509 0.89643 1.26972 0.93094 1.05918 0.92679 1.70184 1.15396 1.39128 1.20296 0.84952 0.79277 0.74935 0.78970 1.17145 1.19517 1.19060 1.75064 1.05602 1.16225 1.19224 1.78151 1.19312 1.19183 0.90839 0.83525 0.85538 0.83352 0.83322 0.75348 0.90951 0.94272 0.77525 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 14.02 67.63 0.95 -0.02 16 2 C -0.13 -1.56 5.87 25.49 0.15 -1.41 16 3 Cl -0.09 -1.48 28.99 -2.72 -0.08 -1.56 16 4 C 0.15 1.49 6.70 85.64 0.57 2.07 16 5 N -0.28 -5.84 3.43 -351.48 -1.21 -7.05 16 6 C -0.01 -0.17 11.50 83.49 0.96 0.79 16 7 C -0.05 -1.51 6.61 41.60 0.28 -1.23 16 8 C 0.22 9.19 6.23 85.63 0.53 9.73 16 9 N -0.75 -35.04 5.54 -471.15 -2.61 -37.65 16 10 C 0.54 31.97 7.75 86.36 0.67 32.64 16 11 O -0.63 -42.72 15.02 -4.33 -0.06 -42.79 16 12 C -0.57 -32.88 9.54 24.83 0.24 -32.64 16 13 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 14 C 0.03 1.60 5.50 85.31 0.47 2.07 16 15 N -0.82 -50.61 11.83 21.84 0.26 -50.35 16 16 Si 1.00 41.26 29.56 68.60 2.03 43.29 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 20 N -0.29 -10.57 12.41 -48.60 -0.60 -11.17 16 21 N -0.10 -2.76 12.92 37.02 0.48 -2.28 16 22 H 0.15 0.87 7.99 -2.91 -0.02 0.84 16 23 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 24 H 0.15 0.68 7.99 -2.39 -0.02 0.66 16 25 H 0.15 0.67 8.07 -2.39 -0.02 0.65 16 26 H 0.23 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.39 16.50 8.44 -92.71 -0.78 15.72 16 30 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 Total: -1.00 -83.88 295.78 3.42 -80.47 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.40 Total: 17.11 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.82 Total: 11.98 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -3.68 Total: -108.51 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.06 Total: -42.79 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -83.88 3.42 -80.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881426560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.278 kcal (2) G-P(sol) polarization free energy of solvation -83.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds