Wall clock time and date at job start Mon Mar 30 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34752 * 117.00040 * 2 1 4 4 O 1.21511 * 120.00078 * 359.97438 * 3 2 1 5 5 C 1.47405 * 120.00136 * 179.97438 * 3 2 1 6 6 C 1.39645 * 120.47266 * 359.97438 * 5 3 2 7 7 N 1.31652 * 120.52526 * 180.02562 * 6 5 3 8 8 C 1.32607 * 121.65887 * 0.02562 * 7 6 5 9 9 N 1.38495 * 119.53590 * 179.97438 * 8 7 6 10 10 C 1.46495 * 119.99952 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46857 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00056 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99817 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00184 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47284 * 89.99816 * 15 13 11 17 17 H 1.48504 * 109.47001 * 210.00062 * 15 13 11 18 18 H 1.48499 * 109.46892 * 330.00242 * 15 13 11 19 19 C 1.39474 * 120.92558 * 359.97438 * 8 7 6 20 20 Cl 1.73601 * 120.31874 * 180.02562 * 19 8 7 21 21 C 1.36950 * 119.36383 * 359.97438 * 19 8 7 22 22 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47292 * 300.00280 * 1 2 3 24 24 H 1.09005 * 109.46828 * 60.00406 * 1 2 3 25 25 H 1.07991 * 119.73596 * 359.74143 * 6 5 3 26 26 H 0.97002 * 119.99753 * 179.97438 * 9 8 7 27 27 H 1.08996 * 109.47141 * 299.99735 * 10 9 8 28 28 H 1.09008 * 109.47318 * 60.00005 * 10 9 8 29 29 H 0.96996 * 119.99484 * 180.02562 * 14 13 11 30 30 H 1.07994 * 120.75888 * 180.02562 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2778 0.0006 6 6 4.3060 0.1130 0.0017 7 7 5.6208 0.1807 0.0027 8 6 6.2578 1.3437 0.0032 9 7 7.6426 1.3637 0.0048 10 6 8.3933 0.1057 0.0065 11 6 9.8708 0.4024 0.0074 12 1 10.2160 1.4257 0.0072 13 6 10.7818 -0.6325 0.0095 14 7 10.3613 -1.8787 0.0102 15 14 12.6132 -0.2647 0.0114 16 1 13.0969 -0.1658 1.4119 17 1 13.3381 -1.3567 -0.6867 18 1 12.8606 1.0208 -0.6896 19 6 5.5528 2.5472 0.0022 20 17 6.4028 4.0608 0.0022 21 6 4.1835 2.5233 0.0001 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.8193 -0.8510 0.0063 26 1 8.1154 2.2107 0.0049 27 1 8.1372 -0.4690 0.8965 28 1 8.1392 -0.4702 -0.8835 29 1 11.0023 -2.6067 0.0121 30 1 3.6151 3.4415 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882274752.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:21 Heat of formation + Delta-G solvation = -76.736973 kcal Electronic energy + Delta-G solvation = -17472.763900 eV Core-core repulsion = 14293.205147 eV Total energy + Delta-G solvation = -3179.558753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85675 -40.80174 -37.68271 -37.52712 -37.07342 -34.75920 -33.44454 -31.83090 -29.29333 -28.07145 -25.44574 -25.10861 -23.44470 -22.15506 -19.66583 -19.22651 -18.26767 -17.86282 -17.41478 -17.34257 -16.55776 -16.17192 -16.01645 -15.47426 -14.79809 -14.48207 -14.37072 -14.09782 -14.07516 -14.01075 -13.10434 -12.97547 -12.85471 -12.76975 -12.28390 -12.18673 -11.80972 -11.74894 -11.52863 -11.46154 -10.81035 -10.59394 -10.57102 -8.79784 -8.29529 -6.44636 -0.39178 0.05889 0.93749 1.43354 1.44106 1.48451 1.55192 1.76756 2.18558 2.42578 2.68686 3.05888 3.37533 3.66939 3.75517 3.85179 4.17489 4.37542 4.42055 4.55085 4.76142 4.85266 5.01900 5.23967 5.30431 5.32660 5.49880 5.81236 6.01685 6.38022 6.64581 6.71246 7.09516 7.27900 8.81643 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.004321 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.467050 B = 6477.913261 C = 7501.933937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.534 3.466 4 O -0.540 6.540 5 C -0.262 4.262 6 C 0.230 3.770 7 N -0.562 5.562 8 C 0.434 3.566 9 N -0.680 5.680 10 C 0.275 3.725 11 C -0.565 4.565 12 H 0.073 0.927 13 C 0.014 3.986 14 N -0.921 5.921 15 Si 0.976 3.024 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.262 1.262 19 C -0.181 4.181 20 Cl -0.047 7.047 21 C 0.047 3.953 22 H 0.134 0.866 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.198 0.802 26 H 0.413 0.587 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.270 0.730 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 5.921 -0.014 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.381 3.619 4 O -0.432 6.432 5 C -0.270 4.270 6 C 0.068 3.932 7 N -0.281 5.281 8 C 0.192 3.808 9 N -0.305 5.305 10 C 0.153 3.847 11 C -0.603 4.603 12 H 0.091 0.909 13 C -0.186 4.186 14 N -0.559 5.559 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.186 1.186 19 C -0.215 4.215 20 Cl -0.019 7.019 21 C 0.022 3.978 22 H 0.152 0.848 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.215 0.785 26 H 0.251 0.749 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.079 0.921 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.623 5.225 -0.018 15.529 hybrid contribution 0.526 1.116 0.010 1.234 sum -14.098 6.341 -0.008 15.458 Atomic orbital electron populations 1.23595 0.74068 1.05889 1.02703 1.86534 1.25385 1.31360 1.83997 1.20545 0.88072 0.81629 0.71684 1.90806 1.67130 1.36793 1.48489 1.19597 0.90694 0.94726 1.21990 1.23405 0.86792 0.99290 0.83748 1.67712 1.11727 1.25259 1.23440 1.18768 0.86577 0.88504 0.86913 1.45452 1.01435 1.11593 1.71982 1.18689 0.89774 0.80748 0.95470 1.21583 0.91108 0.94073 1.53522 0.90926 1.25857 1.04524 0.94429 0.93817 1.70088 1.36717 0.99591 1.49508 0.85291 0.77946 0.78275 0.78564 1.19696 1.20626 1.18601 1.20688 0.93270 0.86749 1.20832 1.98341 1.77142 1.28833 1.97569 1.21065 0.90959 0.98739 0.87039 0.84826 0.91750 0.91761 0.78529 0.74893 0.97777 0.97772 0.92134 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.36 -7.62 9.83 -56.63 -0.56 -8.18 16 3 C 0.53 13.91 7.89 70.24 0.55 14.47 16 4 O -0.54 -16.06 16.20 19.80 0.32 -15.74 16 5 C -0.26 -7.25 5.89 -20.00 -0.12 -7.37 16 6 C 0.23 6.75 10.79 85.06 0.92 7.66 16 7 N -0.56 -21.23 9.53 -192.19 -1.83 -23.06 16 8 C 0.43 16.39 7.47 133.26 1.00 17.39 16 9 N -0.68 -28.61 5.64 -348.80 -1.97 -30.58 16 10 C 0.28 14.19 5.42 85.63 0.46 14.65 16 11 C -0.57 -30.15 9.28 25.60 0.24 -29.92 16 12 H 0.07 3.64 7.60 -2.91 -0.02 3.62 16 13 C 0.01 0.78 5.46 84.65 0.46 1.24 16 14 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 15 Si 0.98 41.72 29.54 68.60 2.03 43.74 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 19 C -0.18 -5.67 6.32 22.27 0.14 -5.53 16 20 Cl -0.05 -1.32 27.57 -2.72 -0.08 -1.39 16 21 C 0.05 1.32 9.44 22.49 0.21 1.53 16 22 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.20 4.54 7.61 -2.92 -0.02 4.51 16 26 H 0.41 15.98 6.94 -92.71 -0.64 15.34 16 27 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 30 H 0.17 4.05 7.72 -2.91 -0.02 4.02 16 Total: -1.00 -63.15 290.31 3.81 -59.34 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.54 Total: 12.85 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.06 Total: 15.76 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.51 Total: -106.39 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.24 Total: -23.91 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -63.15 3.81 -59.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882274752.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.397 kcal (2) G-P(sol) polarization free energy of solvation -63.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds