Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48502 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47523 * 300.00415 * 3 2 1 6 6 H 1.48504 * 109.46929 * 60.00869 * 3 2 1 7 7 C 1.38795 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00147 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47125 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00466 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99736 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99966 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47257 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47064 * 179.97438 * 16 15 14 18 18 C 1.41385 * 126.57985 * 90.00242 * 17 16 15 19 19 C 1.34507 * 106.84104 * 179.73601 * 18 17 16 20 20 O 1.34300 * 108.42410 * 359.97438 * 19 18 17 21 21 C 1.34307 * 109.47608 * 359.97438 * 20 19 18 22 22 H 0.96995 * 119.99727 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47342 * 59.99513 * 10 9 7 24 24 H 1.09005 * 109.46453 * 299.99861 * 10 9 7 25 25 H 1.09002 * 109.46649 * 59.99865 * 14 13 11 26 26 H 1.08995 * 109.46927 * 299.99698 * 14 13 11 27 27 H 1.08998 * 109.47042 * 59.99681 * 15 14 13 28 28 H 1.09000 * 109.46915 * 300.00256 * 15 14 13 29 29 H 1.09002 * 109.46661 * 60.00021 * 16 15 14 30 30 H 1.09003 * 109.47111 * 300.00671 * 16 15 14 31 31 H 1.08003 * 126.57418 * 359.76478 * 18 17 16 32 32 H 1.08001 * 125.78820 * 179.97438 * 19 18 17 33 33 H 1.07996 * 125.79095 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8917 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7958 -5.5016 -0.0011 13 8 2.8408 -6.3388 -0.0018 14 6 2.2612 -7.6701 -0.0018 15 6 3.3802 -8.7136 -0.0032 16 6 2.7695 -10.1164 -0.0026 17 6 3.8716 -11.1441 -0.0046 18 6 4.4896 -11.7190 1.1296 19 6 5.4108 -12.5866 0.6737 20 8 5.3833 -12.5683 -0.6689 21 6 4.4511 -11.6959 -1.0858 22 1 -0.4849 0.8400 0.0004 23 1 3.1246 -3.7313 0.8894 24 1 3.1245 -3.7312 -0.8906 25 1 1.6446 -7.7979 -0.8916 26 1 1.6456 -7.7983 0.8884 27 1 3.9972 -8.5859 0.8862 28 1 3.9956 -8.5852 -0.8937 29 1 2.1523 -10.2443 -0.8919 30 1 2.1543 -10.2444 0.8881 31 1 4.2648 -11.5033 2.1637 32 1 6.0621 -13.1949 1.2838 33 1 4.2090 -11.4739 -2.1146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893339022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -86.986338 kcal Electronic energy + Delta-G solvation = -16844.249054 eV Core-core repulsion = 13769.829905 eV Total energy + Delta-G solvation = -3074.419149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83411 -39.98661 -36.58969 -35.30853 -32.48586 -32.34183 -30.13057 -29.40364 -26.37917 -25.52750 -22.23434 -21.89209 -21.00820 -20.38416 -17.94166 -17.73138 -17.03412 -16.55747 -16.22819 -15.67178 -15.07932 -14.89003 -14.84811 -14.13313 -13.53774 -13.43728 -13.09724 -12.90923 -12.65063 -12.57900 -12.28145 -11.90708 -11.36905 -11.11688 -11.09091 -11.07313 -10.80992 -10.35042 -10.07085 -9.91567 -9.85790 -9.12470 -8.84077 -8.35274 -6.60291 -6.27554 -4.00050 1.46744 2.25588 2.68210 2.69134 2.86101 3.19641 3.24488 3.29686 3.53748 4.14621 4.44562 4.47535 4.67084 4.86597 4.94192 5.03854 5.08346 5.20812 5.22105 5.37966 5.45720 5.47503 5.62886 5.64425 5.78802 5.81654 5.99025 5.99277 6.09127 6.20695 6.72891 6.81302 7.55704 8.19349 8.30609 9.18106 10.80023 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058225 B = 0.002498 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.781720 B =11204.985820 C =11478.882455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.060 6.060 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.362 6.362 14 C 0.065 3.935 15 C -0.113 4.113 16 C -0.048 4.048 17 C -0.176 4.176 18 C -0.208 4.208 19 C -0.044 4.044 20 O -0.179 6.179 21 C -0.040 4.040 22 H 0.269 0.731 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.201 0.799 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -22.583 0.237 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.166 5.834 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.280 6.280 14 C -0.009 4.009 15 C -0.150 4.150 16 C -0.086 4.086 17 C -0.177 4.177 18 C -0.228 4.228 19 C -0.112 4.112 20 O -0.075 6.075 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.218 0.782 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 8.209 -22.944 0.050 24.368 hybrid contribution 1.668 1.295 0.209 2.122 sum 9.877 -21.649 0.259 23.797 Atomic orbital electron populations 1.70024 1.05983 1.27517 1.46726 1.25014 0.95077 0.99141 0.94366 0.86062 0.79610 0.81581 0.77934 1.19504 1.20511 1.20506 1.22883 0.95059 0.91143 1.59202 0.90532 1.85413 1.04467 0.96619 1.96876 1.23294 1.06908 0.90991 1.06456 1.23293 0.85187 0.87139 0.72368 1.90662 1.16966 1.85698 1.44150 1.86497 1.41321 1.15404 1.84799 1.22988 0.96090 0.79191 1.02665 1.21529 0.97718 0.91742 1.04027 1.19865 0.94593 0.90693 1.03412 1.20407 1.02160 1.02335 0.92828 1.21795 0.99995 1.00867 1.00097 1.24026 1.02882 1.03384 0.80873 1.84071 1.48894 1.51705 1.22800 1.23920 0.92578 0.94362 0.99895 0.92129 0.87933 0.87938 0.91269 0.91268 0.90652 0.90728 0.90588 0.90439 0.83421 0.78212 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.06 -1.61 20.58 -107.50 -2.21 -3.82 16 10 C -0.13 -2.65 6.27 36.01 0.23 -2.42 16 11 C 0.48 9.31 7.98 36.01 0.29 9.60 16 12 O -0.49 -10.84 15.61 -18.75 -0.29 -11.13 16 13 O -0.36 -5.83 10.22 -39.26 -0.40 -6.23 16 14 C 0.07 0.82 5.47 37.16 0.20 1.02 16 15 C -0.11 -1.09 5.58 -26.73 -0.15 -1.24 16 16 C -0.05 -0.39 5.73 -27.89 -0.16 -0.55 16 17 C -0.18 -1.53 5.42 -104.74 -0.57 -2.10 16 18 C -0.21 -1.71 10.87 -39.70 -0.43 -2.14 16 19 C -0.04 -0.32 12.09 29.41 0.36 0.03 16 20 O -0.18 -1.59 10.65 5.71 0.06 -1.53 16 21 C -0.04 -0.32 12.01 29.42 0.35 0.03 16 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.10 1.96 8.14 -51.92 -0.42 1.53 16 24 H 0.10 1.95 8.14 -51.91 -0.42 1.53 16 25 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.20 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -33.55 312.95 -6.30 -39.85 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.19 Total: -2.39 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 0.31 Total: -10.55 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.73 Total: -25.08 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.63 Total: -18.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.55 -6.30 -39.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893339022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.136 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds