Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48502 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47523 * 300.00415 * 3 2 1 6 6 H 1.48504 * 109.46929 * 60.00869 * 3 2 1 7 7 C 1.38795 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00147 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47125 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00466 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99736 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99966 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47257 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47064 * 179.97438 * 16 15 14 18 18 C 1.41385 * 126.57985 * 90.00242 * 17 16 15 19 19 C 1.34507 * 106.84104 * 179.73601 * 18 17 16 20 20 O 1.34300 * 108.42410 * 359.97438 * 19 18 17 21 21 C 1.34307 * 109.47608 * 359.97438 * 20 19 18 22 22 H 0.96995 * 119.99727 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47342 * 59.99513 * 10 9 7 24 24 H 1.09005 * 109.46453 * 299.99861 * 10 9 7 25 25 H 1.09002 * 109.46649 * 59.99865 * 14 13 11 26 26 H 1.08995 * 109.46927 * 299.99698 * 14 13 11 27 27 H 1.08998 * 109.47042 * 59.99681 * 15 14 13 28 28 H 1.09000 * 109.46915 * 300.00256 * 15 14 13 29 29 H 1.09002 * 109.46661 * 60.00021 * 16 15 14 30 30 H 1.09003 * 109.47111 * 300.00671 * 16 15 14 31 31 H 1.08003 * 126.57418 * 359.76478 * 18 17 16 32 32 H 1.08001 * 125.78820 * 179.97438 * 19 18 17 33 33 H 1.07996 * 125.79095 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8917 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7958 -5.5016 -0.0011 13 8 2.8408 -6.3388 -0.0018 14 6 2.2612 -7.6701 -0.0018 15 6 3.3802 -8.7136 -0.0032 16 6 2.7695 -10.1164 -0.0026 17 6 3.8716 -11.1441 -0.0046 18 6 4.4896 -11.7190 1.1296 19 6 5.4108 -12.5866 0.6737 20 8 5.3833 -12.5683 -0.6689 21 6 4.4511 -11.6959 -1.0858 22 1 -0.4849 0.8400 0.0004 23 1 3.1246 -3.7313 0.8894 24 1 3.1245 -3.7312 -0.8906 25 1 1.6446 -7.7979 -0.8916 26 1 1.6456 -7.7983 0.8884 27 1 3.9972 -8.5859 0.8862 28 1 3.9956 -8.5852 -0.8937 29 1 2.1523 -10.2443 -0.8919 30 1 2.1543 -10.2444 0.8881 31 1 4.2648 -11.5033 2.1637 32 1 6.0621 -13.1949 1.2838 33 1 4.2090 -11.4739 -2.1146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893339022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -106.601819 kcal Electronic energy + Delta-G solvation = -16845.099646 eV Core-core repulsion = 13769.829905 eV Total energy + Delta-G solvation = -3075.269740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.41751 -41.45791 -37.88019 -36.19278 -34.61156 -33.12515 -31.40864 -30.33236 -27.76119 -27.16002 -23.16352 -22.45701 -22.37702 -21.04193 -19.88342 -18.74785 -18.19309 -17.84446 -17.17325 -16.89442 -16.79871 -16.06138 -16.03062 -15.52946 -14.66915 -14.59325 -14.45918 -13.76472 -13.73935 -13.63638 -13.25059 -13.14624 -13.03344 -12.91363 -12.64717 -12.27030 -11.97347 -11.76229 -11.59689 -11.45636 -11.17491 -10.56668 -10.37684 -9.41689 -8.73899 -8.37711 -6.17428 0.88255 1.03938 1.12925 1.41335 1.42388 1.56301 1.66722 1.94587 2.23721 2.35116 2.97396 3.26354 3.65990 3.83301 3.92217 4.04958 4.12507 4.18377 4.26522 4.33528 4.44438 4.54214 4.55700 4.75895 4.87004 4.92709 5.14570 5.25116 5.35854 5.39216 5.41533 5.63228 6.18418 6.23490 6.69876 7.04188 8.71808 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058225 B = 0.002498 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.781720 B =11204.985820 C =11478.882455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.086 0.914 9 S -0.140 6.140 10 C -0.109 4.109 11 C 0.488 3.512 12 O -0.522 6.522 13 O -0.354 6.354 14 C 0.059 3.941 15 C -0.100 4.100 16 C -0.042 4.042 17 C -0.194 4.194 18 C -0.229 4.229 19 C -0.045 4.045 20 O -0.193 6.193 21 C -0.047 4.047 22 H 0.272 0.728 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.232 0.768 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 -23.044 0.175 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.087 5.913 10 C -0.257 4.257 11 C 0.330 3.670 12 O -0.410 6.410 13 O -0.271 6.271 14 C -0.015 4.015 15 C -0.138 4.138 16 C -0.079 4.079 17 C -0.195 4.195 18 C -0.248 4.248 19 C -0.111 4.111 20 O -0.089 6.089 21 C -0.114 4.114 22 H 0.082 0.918 23 H 0.139 0.861 24 H 0.140 0.860 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.174 0.826 32 H 0.248 0.752 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 10.151 -23.434 -0.011 25.539 hybrid contribution 1.112 1.264 0.240 1.701 sum 11.263 -22.170 0.230 24.868 Atomic orbital electron populations 1.70173 1.07926 1.28731 1.47802 1.26136 0.96010 1.03323 0.93572 0.84869 0.78591 0.76154 0.78115 1.18055 1.19876 1.19878 1.23221 0.95505 0.91530 1.59170 0.89598 1.85525 1.09391 0.99170 1.97166 1.23094 1.04191 0.90176 1.08276 1.22974 0.84779 0.87499 0.71706 1.90657 1.18337 1.86168 1.45847 1.86472 1.40510 1.16179 1.83959 1.23346 0.97419 0.77745 1.02981 1.21470 0.96646 0.91572 1.04092 1.19809 0.94577 0.89428 1.04131 1.20569 1.02675 1.02909 0.93385 1.22069 1.00620 1.01533 1.00613 1.24665 1.02800 1.03153 0.80531 1.84078 1.49203 1.52013 1.23620 1.24416 0.92140 0.93906 1.00924 0.91846 0.86050 0.86005 0.90867 0.91187 0.90882 0.90355 0.89500 0.90195 0.82576 0.75217 0.75968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.87 13.22 21.65 0.29 -54.59 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.14 -7.58 20.58 -56.49 -1.16 -8.75 16 10 C -0.11 -4.38 6.27 71.24 0.45 -3.93 16 11 C 0.49 18.58 7.98 71.24 0.57 19.15 16 12 O -0.52 -23.19 15.61 21.98 0.34 -22.85 16 13 O -0.35 -10.84 10.22 -51.44 -0.53 -11.37 16 14 C 0.06 1.40 5.47 71.98 0.39 1.79 16 15 C -0.10 -1.77 5.58 30.59 0.17 -1.60 16 16 C -0.04 -0.61 5.73 29.85 0.17 -0.44 16 17 C -0.19 -3.08 5.42 -19.94 -0.11 -3.19 16 18 C -0.23 -3.45 10.87 22.19 0.24 -3.21 16 19 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 20 O -0.19 -3.15 10.65 -2.50 -0.03 -3.18 16 21 C -0.05 -0.68 12.01 66.97 0.80 0.12 16 22 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 23 H 0.12 4.43 8.14 -2.40 -0.02 4.41 16 24 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 25 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 26 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.23 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -72.42 312.95 6.65 -65.77 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.10 Total: 9.81 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 4.61 Total: -19.83 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.29 Total: -54.59 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.21 Total: -37.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.75 kcal Total: -72.42 6.65 -65.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893339022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.834 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds