Wall clock time and date at job start Mon Mar 30 2020 01:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47584 * 270.00112 * 3 2 1 5 5 H 1.48508 * 109.47206 * 30.00132 * 3 2 1 6 6 H 1.48497 * 109.46994 * 149.99541 * 3 2 1 7 7 C 1.37879 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00185 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99492 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.46901 * 179.97438 * 9 7 2 11 11 O 1.42098 * 108.57784 * 65.51185 * 10 9 7 12 12 O 1.42099 * 108.57941 * 294.48784 * 10 9 7 13 13 C 1.81399 * 101.92271 * 179.97438 * 10 9 7 14 14 C 1.50700 * 109.47212 * 179.97438 * 13 10 9 15 15 C 1.38226 * 120.00075 * 90.00158 * 14 13 10 16 16 C 1.38234 * 120.00461 * 179.97438 * 15 14 13 17 17 C 1.38239 * 119.99681 * 0.02568 * 16 15 14 18 18 C 1.50699 * 120.00049 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00114 * 18 17 16 20 20 C 1.38236 * 119.99618 * 0.24824 * 17 16 15 21 21 C 1.38234 * 119.99732 * 269.97946 * 14 13 10 22 22 H 0.97003 * 120.00292 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47325 * 59.99563 * 9 7 2 24 24 H 1.09003 * 109.47297 * 299.99861 * 9 7 2 25 25 H 1.09002 * 109.47040 * 60.00128 * 13 10 9 26 26 H 1.08993 * 109.47299 * 300.00286 * 13 10 9 27 27 H 1.08004 * 120.00431 * 359.97438 * 15 14 13 28 28 H 1.07993 * 120.00649 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47247 * 330.00049 * 18 17 16 30 30 H 1.09001 * 109.47358 * 209.99475 * 18 17 16 31 31 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.99728 * 179.72715 * 20 17 16 33 33 H 1.07999 * 120.00463 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 16 4.1162 -2.9042 -0.0001 11 8 3.7412 -3.5169 -1.2262 12 8 3.7403 -3.5175 1.2254 13 6 5.9145 -2.6659 -0.0001 14 6 6.5992 -4.0084 0.0004 15 6 6.9132 -4.6245 -1.1965 16 6 7.5418 -5.8557 -1.1961 17 6 7.8557 -6.4710 0.0013 18 6 8.5404 -7.8135 0.0018 19 8 9.9571 -7.6257 0.0019 20 6 7.5365 -5.8574 1.1982 21 6 6.9135 -4.6234 1.1978 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6807 0.8904 24 1 3.8752 -0.6795 -0.8895 25 1 6.2072 -2.1088 0.8899 26 1 6.2071 -2.1087 -0.8900 27 1 6.6676 -4.1440 -2.1320 28 1 7.7875 -6.3369 -2.1311 29 1 8.2478 -8.3709 -0.8880 30 1 8.2478 -8.3703 0.8920 31 1 10.4631 -8.4497 0.0026 32 1 7.7779 -6.3402 2.1337 33 1 6.6688 -4.1417 2.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:11 Heat of formation + Delta-G solvation = -101.359327 kcal Electronic energy + Delta-G solvation = -17986.105123 eV Core-core repulsion = 14911.062715 eV Total energy + Delta-G solvation = -3075.042409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60445 -36.95321 -36.13538 -35.17365 -33.28164 -33.23069 -31.00530 -29.88236 -28.71214 -24.86600 -22.95371 -22.82787 -20.93300 -18.14369 -17.72012 -17.39880 -16.47900 -16.03290 -15.81767 -15.52588 -15.13533 -14.91702 -14.11032 -14.06774 -13.71108 -13.46897 -12.97170 -12.71342 -12.57594 -12.44569 -12.19983 -11.62090 -11.29333 -11.26926 -11.19471 -11.07850 -10.87455 -10.61209 -10.35538 -10.29853 -9.87143 -9.41556 -8.96155 -8.83770 -8.58743 -6.31007 -4.39519 0.57255 1.30172 1.36959 3.13418 3.19518 3.22292 3.56210 3.65656 4.17185 4.20806 4.30594 4.48411 4.70744 4.73408 4.84157 4.93385 4.97616 5.10792 5.15660 5.37272 5.40910 5.53225 5.61277 5.90588 5.99662 6.15885 6.26704 6.29587 6.46943 6.48853 6.89119 7.18843 7.30791 8.02761 8.63324 9.23198 10.80215 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050404 B = 0.004095 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.374016 B = 6836.139779 C = 6916.754745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.087 3.913 3 Si 0.882 3.118 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.088 0.912 9 C -0.457 4.457 10 S 2.414 3.586 11 O -0.943 6.943 12 O -0.943 6.943 13 C -0.594 4.594 14 C -0.070 4.070 15 C -0.108 4.108 16 C -0.098 4.098 17 C -0.097 4.097 18 C 0.118 3.882 19 O -0.568 6.568 20 C -0.098 4.098 21 C -0.108 4.108 22 H 0.271 0.729 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.378 0.622 32 H 0.126 0.874 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.447 -9.943 0.017 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.119 4.119 3 Si 0.708 3.292 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.106 0.894 9 C -0.591 4.591 10 S 2.597 3.403 11 O -0.941 6.941 12 O -0.940 6.940 13 C -0.717 4.717 14 C -0.071 4.071 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.098 4.098 18 C 0.041 3.959 19 O -0.374 6.374 20 C -0.116 4.116 21 C -0.127 4.127 22 H 0.082 0.918 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.225 0.775 32 H 0.144 0.856 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.653 -10.006 0.019 20.292 hybrid contribution 0.963 1.158 -0.013 1.506 sum 18.616 -8.848 0.006 20.612 Atomic orbital electron populations 1.69866 1.06288 1.27762 1.47719 1.24901 0.94760 0.99115 0.93161 0.86742 0.80406 0.83051 0.79031 1.19565 1.20570 1.18751 1.20109 0.84990 0.96350 1.55353 0.89382 1.28033 1.08622 1.16785 1.05656 1.08453 0.75827 0.80615 0.75374 1.93492 1.79607 1.75236 1.45723 1.93493 1.79582 1.75184 1.45770 1.29685 1.28287 1.01878 1.11805 1.19086 0.99873 0.93961 0.94198 1.21166 0.98097 0.95627 0.97824 1.21001 0.98068 0.94939 0.97589 1.19636 0.99945 0.96501 0.93678 1.20985 0.80787 0.93561 1.00594 1.86580 1.17337 1.35739 1.97731 1.21002 0.98092 0.94913 0.97590 1.21169 0.98133 0.95595 0.97816 0.91847 0.89707 0.90128 0.84450 0.84444 0.84924 0.85569 0.92594 0.92594 0.77460 0.85569 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.27 13.96 55.43 0.77 -25.49 16 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.88 20.19 27.47 -169.99 -4.67 15.52 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 7 C -0.53 -14.86 9.68 -34.44 -0.33 -15.19 16 8 H 0.09 2.70 7.96 -52.49 -0.42 2.28 16 9 C -0.46 -10.00 4.63 36.01 0.17 -9.83 16 10 S 2.41 48.43 4.62 -107.50 -0.50 47.93 16 11 O -0.94 -21.61 18.10 -57.83 -1.05 -22.66 16 12 O -0.94 -21.62 18.10 -57.83 -1.05 -22.67 16 13 C -0.59 -8.49 5.93 36.01 0.21 -8.27 16 14 C -0.07 -1.06 5.14 -104.63 -0.54 -1.59 16 15 C -0.11 -1.54 9.70 -39.59 -0.38 -1.92 16 16 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 17 C -0.10 -1.20 5.51 -104.62 -0.58 -1.78 16 18 C 0.12 1.07 7.17 36.01 0.26 1.33 16 19 O -0.57 -5.28 13.64 -35.23 -0.48 -5.76 16 20 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 21 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.08 1.67 7.20 -51.93 -0.37 1.30 16 24 H 0.08 1.56 7.57 -51.92 -0.39 1.17 16 25 H 0.14 1.59 8.08 -51.92 -0.42 1.17 16 26 H 0.14 1.58 8.09 -51.93 -0.42 1.16 16 27 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.38 1.53 9.12 45.56 0.42 1.94 16 32 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -36.85 303.71 -8.14 -44.99 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.31 Total: 3.66 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: -2.44 Total: -40.10 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.49 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -2.57 Total: -51.09 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: 48.43 SS G_CDS: -0.50 Total: 47.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.85 -8.14 -44.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.367 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds