Wall clock time and date at job start Mon Mar 30 2020 01:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47584 * 270.00112 * 3 2 1 5 5 H 1.48508 * 109.47206 * 30.00132 * 3 2 1 6 6 H 1.48497 * 109.46994 * 149.99541 * 3 2 1 7 7 C 1.37879 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00185 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99492 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.46901 * 179.97438 * 9 7 2 11 11 O 1.42098 * 108.57784 * 65.51185 * 10 9 7 12 12 O 1.42099 * 108.57941 * 294.48784 * 10 9 7 13 13 C 1.81399 * 101.92271 * 179.97438 * 10 9 7 14 14 C 1.50700 * 109.47212 * 179.97438 * 13 10 9 15 15 C 1.38226 * 120.00075 * 90.00158 * 14 13 10 16 16 C 1.38234 * 120.00461 * 179.97438 * 15 14 13 17 17 C 1.38239 * 119.99681 * 0.02568 * 16 15 14 18 18 C 1.50699 * 120.00049 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00114 * 18 17 16 20 20 C 1.38236 * 119.99618 * 0.24824 * 17 16 15 21 21 C 1.38234 * 119.99732 * 269.97946 * 14 13 10 22 22 H 0.97003 * 120.00292 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47325 * 59.99563 * 9 7 2 24 24 H 1.09003 * 109.47297 * 299.99861 * 9 7 2 25 25 H 1.09002 * 109.47040 * 60.00128 * 13 10 9 26 26 H 1.08993 * 109.47299 * 300.00286 * 13 10 9 27 27 H 1.08004 * 120.00431 * 359.97438 * 15 14 13 28 28 H 1.07993 * 120.00649 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47247 * 330.00049 * 18 17 16 30 30 H 1.09001 * 109.47358 * 209.99475 * 18 17 16 31 31 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.99728 * 179.72715 * 20 17 16 33 33 H 1.07999 * 120.00463 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 16 4.1162 -2.9042 -0.0001 11 8 3.7412 -3.5169 -1.2262 12 8 3.7403 -3.5175 1.2254 13 6 5.9145 -2.6659 -0.0001 14 6 6.5992 -4.0084 0.0004 15 6 6.9132 -4.6245 -1.1965 16 6 7.5418 -5.8557 -1.1961 17 6 7.8557 -6.4710 0.0013 18 6 8.5404 -7.8135 0.0018 19 8 9.9571 -7.6257 0.0019 20 6 7.5365 -5.8574 1.1982 21 6 6.9135 -4.6234 1.1978 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6807 0.8904 24 1 3.8752 -0.6795 -0.8895 25 1 6.2072 -2.1088 0.8899 26 1 6.2071 -2.1087 -0.8900 27 1 6.6676 -4.1440 -2.1320 28 1 7.7875 -6.3369 -2.1311 29 1 8.2478 -8.3709 -0.8880 30 1 8.2478 -8.3703 0.8920 31 1 10.4631 -8.4497 0.0026 32 1 7.7779 -6.3402 2.1337 33 1 6.6688 -4.1417 2.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:11 Heat of formation + Delta-G solvation = -131.934016 kcal Electronic energy + Delta-G solvation = -17987.430941 eV Core-core repulsion = 14911.062715 eV Total energy + Delta-G solvation = -3076.368227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54330 -37.81054 -37.65628 -36.83461 -35.29584 -34.24424 -31.97017 -31.78538 -29.71230 -25.90583 -24.79112 -23.80026 -21.91895 -19.72742 -19.35812 -18.34830 -17.65161 -17.44311 -17.16221 -16.81157 -16.46918 -16.19977 -15.81307 -14.85477 -14.69879 -14.57345 -14.41137 -14.22644 -13.99007 -13.52540 -13.48272 -13.10148 -12.96056 -12.88816 -12.58933 -12.30045 -12.20899 -12.03444 -11.83774 -11.74782 -11.12546 -10.96722 -10.90820 -9.94519 -9.65569 -8.41999 -6.58431 -0.91302 0.26523 0.38612 1.35611 1.39760 1.50698 2.14626 2.30513 2.60966 2.89028 2.89659 3.24469 3.44589 3.61015 3.75643 4.01683 4.04657 4.15156 4.39482 4.43165 4.44315 4.52073 4.56595 4.62397 4.70767 4.95079 5.05737 5.27212 5.31950 5.45360 5.54039 5.85438 5.93863 6.47291 6.92491 7.08858 8.74060 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050404 B = 0.004095 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.374016 B = 6836.139779 C = 6916.754745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.222 1.222 7 C -0.554 4.554 8 H 0.031 0.969 9 C -0.475 4.475 10 S 2.408 3.592 11 O -0.987 6.987 12 O -0.987 6.987 13 C -0.552 4.552 14 C -0.102 4.102 15 C -0.123 4.123 16 C -0.109 4.109 17 C -0.102 4.102 18 C 0.118 3.882 19 O -0.588 6.588 20 C -0.109 4.109 21 C -0.123 4.123 22 H 0.275 0.725 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.174 0.826 26 H 0.175 0.825 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.401 0.599 32 H 0.148 0.852 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.378 -9.204 0.040 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.144 1.144 7 C -0.592 4.592 8 H 0.049 0.951 9 C -0.607 4.607 10 S 2.598 3.402 11 O -0.985 6.985 12 O -0.985 6.985 13 C -0.681 4.681 14 C -0.104 4.104 15 C -0.142 4.142 16 C -0.127 4.127 17 C -0.103 4.103 18 C 0.041 3.959 19 O -0.397 6.397 20 C -0.127 4.127 21 C -0.142 4.142 22 H 0.084 0.916 23 H 0.133 0.867 24 H 0.132 0.868 25 H 0.192 0.808 26 H 0.192 0.808 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.166 0.834 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 21.521 -9.294 0.043 23.442 hybrid contribution -0.156 0.713 -0.024 0.730 sum 21.366 -8.581 0.020 23.024 Atomic orbital electron populations 1.70046 1.08813 1.29260 1.49623 1.26169 0.95780 1.04194 0.92252 0.85589 0.80311 0.76317 0.80250 1.17996 1.20572 1.14438 1.20411 0.88807 0.94546 1.55473 0.95091 1.28100 1.04443 1.19741 1.08371 1.08184 0.78862 0.79395 0.73768 1.93430 1.82425 1.75733 1.46885 1.93430 1.82402 1.75691 1.46934 1.29268 1.20184 1.03011 1.15644 1.19278 1.01485 0.94680 0.94946 1.21476 0.98222 0.96386 0.98105 1.21362 0.97710 0.94715 0.98917 1.20143 0.99078 0.97668 0.93383 1.21023 0.80710 0.91853 1.02290 1.86506 1.17469 1.37909 1.97825 1.21364 0.97737 0.94692 0.98922 1.21478 0.98259 0.96360 0.98096 0.91560 0.86664 0.86809 0.80801 0.80750 0.83973 0.83421 0.90931 0.90932 0.74870 0.83421 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.02 0.94 5.47 84.65 0.46 1.40 16 3 Si 0.96 40.37 27.47 68.60 1.88 42.25 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.22 -7.87 6.54 99.48 0.65 -7.22 16 7 C -0.55 -32.23 9.68 25.60 0.25 -31.99 16 8 H 0.03 2.06 7.96 -2.91 -0.02 2.04 16 9 C -0.47 -20.11 4.63 71.24 0.33 -19.79 16 10 S 2.41 96.14 4.62 -56.49 -0.26 95.88 16 11 O -0.99 -46.48 18.10 -127.37 -2.30 -48.78 16 12 O -0.99 -46.49 18.10 -127.37 -2.31 -48.80 16 13 C -0.55 -13.86 5.93 71.24 0.42 -13.44 16 14 C -0.10 -2.85 5.14 -19.87 -0.10 -2.95 16 15 C -0.12 -3.24 9.70 22.27 0.22 -3.02 16 16 C -0.11 -2.55 9.70 22.27 0.22 -2.33 16 17 C -0.10 -2.28 5.51 -19.86 -0.11 -2.39 16 18 C 0.12 1.79 7.17 71.24 0.51 2.30 16 19 O -0.59 -9.17 13.64 -148.98 -2.03 -11.20 16 20 C -0.11 -2.55 9.70 22.27 0.22 -2.34 16 21 C -0.12 -3.24 9.70 22.27 0.22 -3.02 16 22 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.12 4.16 7.20 -2.39 -0.02 4.14 16 24 H 0.11 4.05 7.57 -2.39 -0.02 4.03 16 25 H 0.17 3.15 8.08 -2.39 -0.02 3.14 16 26 H 0.17 3.15 8.09 -2.39 -0.02 3.13 16 27 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 30 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.40 2.01 9.12 -74.06 -0.68 1.34 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -86.30 303.71 -1.70 -88.00 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.39 Total: 18.55 kcal Atomic # 6 Polarization: -80.19 SS G_CDS: 2.63 Total: -77.56 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.30 Total: -58.34 kcal Atomic # 8 Polarization: -102.14 SS G_CDS: -6.64 Total: -108.78 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.88 Total: 42.25 kcal Atomic # 16 Polarization: 96.14 SS G_CDS: -0.26 Total: 95.88 kcal Total: -86.30 -1.70 -88.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.935 kcal (2) G-P(sol) polarization free energy of solvation -86.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds