Wall clock time and date at job start Mon Mar 30 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00054 * 2 1 4 4 H 1.48505 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47150 * 299.99809 * 3 2 1 6 6 H 1.48504 * 109.47078 * 59.99512 * 3 2 1 7 7 C 1.37881 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00039 * 0.02562 * 7 2 1 10 10 S 1.81393 * 109.47196 * 180.02562 * 9 7 2 11 11 O 1.42106 * 108.58118 * 65.51157 * 10 9 7 12 12 O 1.42095 * 108.58107 * 294.48720 * 10 9 7 13 13 C 1.81399 * 101.92339 * 179.97438 * 10 9 7 14 14 C 1.53001 * 109.47472 * 179.97438 * 13 10 9 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 10 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96995 * 119.99514 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47172 * 59.99640 * 9 7 2 24 24 H 1.09003 * 109.46911 * 299.99794 * 9 7 2 25 25 H 1.08999 * 109.47204 * 59.99932 * 13 10 9 26 26 H 1.09006 * 109.46890 * 299.99952 * 13 10 9 27 27 H 1.08999 * 109.46920 * 59.99808 * 14 13 10 28 28 H 1.08998 * 109.47220 * 300.00179 * 14 13 10 29 29 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 30 30 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 32 32 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 33 33 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0021 11 8 3.1475 -3.8587 1.2284 12 8 3.1493 -3.8599 -1.2231 13 6 1.3243 -5.3161 0.0026 14 6 2.1570 -6.5996 0.0033 15 8 1.2861 -7.7326 0.0032 16 6 1.8702 -8.9597 0.0042 17 6 1.0845 -10.1031 0.0047 18 6 1.6805 -11.3493 0.0053 19 6 3.0589 -11.4576 0.0059 20 6 3.8442 -10.3196 0.0050 21 6 3.2530 -9.0711 0.0044 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.6958 -5.2917 -0.8876 26 1 0.6951 -5.2903 0.8924 27 1 2.7858 -6.6243 0.8933 28 1 2.7859 -6.6252 -0.8866 29 1 0.0078 -10.0190 0.0090 30 1 1.0693 -12.2398 0.0061 31 1 3.5230 -12.4329 0.0068 32 1 4.9206 -10.4069 0.0051 33 1 3.8667 -8.1824 0.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905267223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:05 Heat of formation + Delta-G solvation = -91.399937 kcal Electronic energy + Delta-G solvation = -17707.784840 eV Core-core repulsion = 14633.174303 eV Total energy + Delta-G solvation = -3074.610537 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21129 -37.60325 -36.16196 -35.23677 -33.40373 -32.29859 -31.08098 -29.61829 -29.14321 -24.71113 -23.39991 -22.59714 -21.68389 -18.69148 -17.97860 -16.93052 -16.45318 -16.44480 -15.92956 -15.53088 -15.14994 -15.13777 -14.47186 -14.24049 -13.68324 -13.51223 -13.50496 -12.55557 -12.25555 -12.20482 -12.07223 -11.78243 -11.45031 -11.29888 -11.22308 -11.01011 -10.96415 -10.94236 -10.66595 -10.37791 -9.82451 -9.21695 -9.19006 -8.75898 -8.36580 -6.37830 -4.47807 0.73450 1.15500 1.27476 3.07340 3.18458 3.25703 3.32928 3.61764 3.65808 4.17530 4.33815 4.54988 4.61508 4.71892 4.80946 4.91795 4.94013 5.06340 5.08366 5.19825 5.27778 5.46423 5.55987 5.79056 5.81826 6.14398 6.22869 6.34227 6.56331 6.59258 6.62764 7.26649 7.42739 7.69315 8.54384 9.19818 10.74040 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.057827 B = 0.003482 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.087767 B = 8039.506322 C = 8338.171295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.074 0.926 9 C -0.395 4.395 10 S 2.395 3.605 11 O -0.952 6.952 12 O -0.952 6.952 13 C -0.637 4.637 14 C 0.076 3.924 15 O -0.307 6.307 16 C 0.130 3.870 17 C -0.154 4.154 18 C -0.083 4.083 19 C -0.163 4.163 20 C -0.079 4.079 21 C -0.211 4.211 22 H 0.269 0.731 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 -18.254 0.008 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.092 0.908 9 C -0.531 4.531 10 S 2.579 3.421 11 O -0.950 6.950 12 O -0.950 6.950 13 C -0.760 4.760 14 C 0.000 4.000 15 O -0.221 6.221 16 C 0.085 3.915 17 C -0.173 4.173 18 C -0.101 4.101 19 C -0.182 4.182 20 C -0.097 4.097 21 C -0.230 4.230 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.304 -18.175 0.009 18.321 hybrid contribution -0.461 0.783 0.000 0.908 sum 1.843 -17.393 0.009 17.490 Atomic orbital electron populations 1.69955 1.06265 1.27731 1.47748 1.24944 0.95053 0.99652 0.93502 0.86267 0.80397 0.81937 0.78053 1.18932 1.20332 1.20335 1.20401 0.93045 0.88300 1.55244 0.90802 1.27453 1.09493 1.09118 1.06993 1.08987 0.79612 0.78381 0.75085 1.93492 1.69892 1.85922 1.45662 1.93490 1.69805 1.85922 1.45750 1.30871 1.17864 1.14885 1.12362 1.22387 0.92013 0.82797 1.02807 1.86130 1.35858 1.11806 1.88267 1.19124 0.91593 0.85287 0.95537 1.20472 1.00149 0.90082 1.06594 1.20961 0.94893 0.96505 0.97703 1.21060 0.93879 0.98529 1.04685 1.20977 0.99971 0.91760 0.96991 1.21398 0.93700 0.99415 1.08468 0.92175 0.89410 0.89418 0.84446 0.84439 0.90478 0.90484 0.85163 0.85429 0.85979 0.85677 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 13.29 55.43 0.74 -23.67 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.32 9.13 -34.44 -0.31 -14.64 16 8 H 0.07 1.98 7.71 -52.49 -0.40 1.57 16 9 C -0.39 -9.01 5.56 36.01 0.20 -8.81 16 10 S 2.40 46.69 4.64 -107.50 -0.50 46.19 16 11 O -0.95 -21.03 18.10 -57.83 -1.05 -22.07 16 12 O -0.95 -21.02 18.10 -57.83 -1.05 -22.07 16 13 C -0.64 -9.40 6.17 37.16 0.23 -9.17 16 14 C 0.08 1.09 4.75 37.16 0.18 1.27 16 15 O -0.31 -4.51 10.14 -19.42 -0.20 -4.71 16 16 C 0.13 1.74 6.69 -39.22 -0.26 1.48 16 17 C -0.15 -1.76 9.99 -39.43 -0.39 -2.16 16 18 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 19 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 20 C -0.08 -0.81 10.04 -39.61 -0.40 -1.20 16 21 C -0.21 -2.57 9.04 -39.44 -0.36 -2.93 16 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.09 1.95 8.14 -51.92 -0.42 1.52 16 24 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 25 H 0.14 1.80 8.14 -51.92 -0.42 1.37 16 26 H 0.14 1.80 8.14 -51.92 -0.42 1.37 16 27 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 28 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -33.30 304.46 -8.54 -41.84 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.05 Total: 1.54 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: -2.01 Total: -37.33 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.74 Total: -23.67 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -2.29 Total: -48.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.50 Total: 46.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.30 -8.54 -41.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.561 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds