Wall clock time and date at job start Mon Mar 30 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00054 * 2 1 4 4 H 1.48505 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47150 * 299.99809 * 3 2 1 6 6 H 1.48504 * 109.47078 * 59.99512 * 3 2 1 7 7 C 1.37881 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00039 * 0.02562 * 7 2 1 10 10 S 1.81393 * 109.47196 * 180.02562 * 9 7 2 11 11 O 1.42106 * 108.58118 * 65.51157 * 10 9 7 12 12 O 1.42095 * 108.58107 * 294.48720 * 10 9 7 13 13 C 1.81399 * 101.92339 * 179.97438 * 10 9 7 14 14 C 1.53001 * 109.47472 * 179.97438 * 13 10 9 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 10 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96995 * 119.99514 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47172 * 59.99640 * 9 7 2 24 24 H 1.09003 * 109.46911 * 299.99794 * 9 7 2 25 25 H 1.08999 * 109.47204 * 59.99932 * 13 10 9 26 26 H 1.09006 * 109.46890 * 299.99952 * 13 10 9 27 27 H 1.08999 * 109.46920 * 59.99808 * 14 13 10 28 28 H 1.08998 * 109.47220 * 300.00179 * 14 13 10 29 29 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 30 30 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 32 32 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 33 33 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0021 11 8 3.1475 -3.8587 1.2284 12 8 3.1493 -3.8599 -1.2231 13 6 1.3243 -5.3161 0.0026 14 6 2.1570 -6.5996 0.0033 15 8 1.2861 -7.7326 0.0032 16 6 1.8702 -8.9597 0.0042 17 6 1.0845 -10.1031 0.0047 18 6 1.6805 -11.3493 0.0053 19 6 3.0589 -11.4576 0.0059 20 6 3.8442 -10.3196 0.0050 21 6 3.2530 -9.0711 0.0044 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.6958 -5.2917 -0.8876 26 1 0.6951 -5.2903 0.8924 27 1 2.7858 -6.6243 0.8933 28 1 2.7859 -6.6252 -0.8866 29 1 0.0078 -10.0190 0.0090 30 1 1.0693 -12.2398 0.0061 31 1 3.5230 -12.4329 0.0068 32 1 4.9206 -10.4069 0.0051 33 1 3.8667 -8.1824 0.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905267223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:05 Heat of formation + Delta-G solvation = -114.464687 kcal Electronic energy + Delta-G solvation = -17708.785003 eV Core-core repulsion = 14633.174303 eV Total energy + Delta-G solvation = -3075.610700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12601 -38.49407 -37.86771 -36.93980 -35.39523 -33.43425 -31.88615 -31.06787 -30.48241 -26.11928 -25.00373 -23.44132 -22.63305 -19.91080 -19.34182 -18.87359 -17.63894 -17.61950 -16.99517 -16.88388 -16.66177 -16.62361 -15.99471 -15.28265 -14.64258 -14.60898 -14.45001 -14.34868 -14.03217 -13.39663 -13.21392 -13.12405 -13.02511 -12.94540 -12.74073 -12.54723 -12.51979 -12.00079 -11.96850 -11.76818 -11.69885 -10.99061 -10.77481 -9.98119 -9.23687 -8.41131 -6.57102 -0.85907 0.36404 0.45086 1.38093 1.39168 1.53144 1.99518 2.10391 2.31761 2.81875 2.90655 2.92827 3.21949 3.40279 3.66748 3.86281 3.94750 4.02235 4.27669 4.32834 4.41174 4.50199 4.63738 4.73584 4.77748 4.78217 5.07007 5.32888 5.37367 5.46216 5.57884 5.74624 5.81585 6.32455 6.53158 7.13777 8.71618 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.057827 B = 0.003482 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.087767 B = 8039.506322 C = 8338.171295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.562 4.562 8 H 0.064 0.936 9 C -0.419 4.419 10 S 2.428 3.572 11 O -0.982 6.982 12 O -0.982 6.982 13 C -0.610 4.610 14 C 0.067 3.933 15 O -0.318 6.318 16 C 0.097 3.903 17 C -0.166 4.166 18 C -0.081 4.081 19 C -0.160 4.160 20 C -0.086 4.086 21 C -0.230 4.230 22 H 0.274 0.726 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.161 0.839 26 H 0.161 0.839 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -20.220 0.008 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.082 0.918 9 C -0.553 4.553 10 S 2.615 3.385 11 O -0.979 6.979 12 O -0.979 6.979 13 C -0.738 4.738 14 C -0.009 4.009 15 O -0.232 6.232 16 C 0.052 3.948 17 C -0.185 4.185 18 C -0.099 4.099 19 C -0.178 4.178 20 C -0.104 4.104 21 C -0.248 4.248 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.179 0.821 26 H 0.179 0.821 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.156 0.844 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.420 -20.084 0.009 20.229 hybrid contribution -0.509 1.166 0.000 1.272 sum 1.911 -18.918 0.010 19.015 Atomic orbital electron populations 1.70017 1.07362 1.28783 1.48494 1.25796 0.95971 1.02995 0.93113 0.85425 0.79097 0.78201 0.78732 1.18909 1.19235 1.19246 1.20808 0.93126 0.90706 1.55410 0.91831 1.27566 1.10526 1.10211 1.06981 1.07608 0.78752 0.78454 0.73687 1.93450 1.70926 1.86833 1.46693 1.93448 1.70840 1.86831 1.46777 1.30443 1.16592 1.11860 1.14926 1.22421 0.92061 0.82802 1.03579 1.86061 1.35945 1.12231 1.89002 1.19460 0.92465 0.85094 0.97739 1.20754 1.00664 0.90344 1.06705 1.21369 0.95504 0.96749 0.96237 1.21488 0.93918 0.99532 1.02821 1.21321 1.01355 0.91360 0.96385 1.21570 0.93505 1.00448 1.09321 0.91733 0.89299 0.89311 0.82089 0.82083 0.89920 0.89925 0.84447 0.82395 0.83020 0.83582 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.95 13.29 21.45 0.28 -50.67 16 2 C 0.02 1.32 5.46 84.65 0.46 1.78 16 3 Si 0.96 42.61 29.54 68.60 2.03 44.63 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.56 -31.00 9.13 25.60 0.23 -30.77 16 8 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 9 C -0.42 -19.48 5.56 71.24 0.40 -19.08 16 10 S 2.43 94.68 4.64 -56.49 -0.26 94.41 16 11 O -0.98 -43.64 18.10 -127.37 -2.30 -45.94 16 12 O -0.98 -43.63 18.10 -127.37 -2.31 -45.93 16 13 C -0.61 -17.01 6.17 71.98 0.44 -16.56 16 14 C 0.07 1.87 4.75 71.98 0.34 2.22 16 15 O -0.32 -8.99 10.14 -92.40 -0.94 -9.93 16 16 C 0.10 2.50 6.69 22.51 0.15 2.65 16 17 C -0.17 -3.52 9.99 22.37 0.22 -3.29 16 18 C -0.08 -1.29 10.04 22.25 0.22 -1.07 16 19 C -0.16 -2.45 10.04 22.28 0.22 -2.23 16 20 C -0.09 -1.58 10.04 22.25 0.22 -1.36 16 21 C -0.23 -5.38 9.04 22.36 0.20 -5.17 16 22 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 23 H 0.09 4.02 8.14 -2.39 -0.02 4.00 16 24 H 0.09 4.02 8.14 -2.39 -0.02 4.00 16 25 H 0.16 3.84 8.14 -2.39 -0.02 3.82 16 26 H 0.16 3.84 8.14 -2.39 -0.02 3.82 16 27 H 0.08 2.17 7.66 -2.39 -0.02 2.15 16 28 H 0.08 2.17 7.66 -2.39 -0.02 2.15 16 29 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.13 2.90 6.30 -2.91 -0.02 2.88 16 Total: -1.00 -72.01 304.46 0.73 -71.28 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.10 Total: 15.02 kcal Atomic # 6 Polarization: -76.01 SS G_CDS: 3.13 Total: -72.89 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.28 Total: -50.67 kcal Atomic # 8 Polarization: -96.25 SS G_CDS: -5.55 Total: -101.80 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 94.68 SS G_CDS: -0.26 Total: 94.41 kcal Total: -72.01 0.73 -71.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.182 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds