Wall clock time and date at job start Mon Mar 30 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86807 * 119.99963 * 2 1 4 4 H 1.48504 * 109.46938 * 269.99580 * 3 2 1 5 5 H 1.48490 * 109.47182 * 30.00113 * 3 2 1 6 6 H 1.48499 * 109.46941 * 150.00087 * 3 2 1 7 7 C 1.38632 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34799 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.35798 * 116.99375 * 185.06092 * 9 7 2 11 11 C 1.38714 * 120.09250 * 354.40483 * 10 9 7 12 12 C 1.38352 * 119.98510 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.92325 * 180.02562 * 12 11 10 14 14 C 1.38526 * 120.15741 * 0.02562 * 12 11 10 15 15 C 1.38214 * 120.17700 * 359.67812 * 14 12 11 16 16 C 1.38720 * 120.01446 * 0.59332 * 15 14 12 17 17 N 1.39926 * 120.07846 * 179.69905 * 16 15 14 18 18 C 1.46497 * 120.00156 * 359.72887 * 17 16 15 19 19 C 1.52999 * 109.46963 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46905 * 180.02562 * 19 18 17 21 21 O 1.21801 * 119.99903 * 134.99989 * 20 19 18 22 22 O 1.21802 * 120.00081 * 314.99679 * 20 19 18 23 23 H 0.97010 * 120.00072 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00939 * 359.97438 * 11 10 9 25 25 H 1.08005 * 119.91637 * 180.02562 * 14 12 11 26 26 H 1.08003 * 119.99806 * 180.32604 * 15 14 12 27 27 H 0.97005 * 119.99887 * 179.73121 * 17 16 15 28 28 H 1.09002 * 109.47083 * 60.00400 * 18 17 16 29 29 H 1.08995 * 109.47755 * 300.00106 * 18 17 16 30 30 H 1.09003 * 109.47483 * 300.00170 * 19 18 17 31 31 H 1.08996 * 109.47479 * 60.00339 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2005 0.0010 9 8 1.3348 -2.3679 0.0016 10 6 2.0704 -3.5044 0.1088 11 6 3.4560 -3.4400 0.0942 12 6 4.2032 -4.5992 0.2030 13 9 5.5527 -4.5350 0.1891 14 6 3.5711 -5.8257 0.3262 15 6 2.1910 -5.8969 0.3477 16 6 1.4346 -4.7397 0.2334 17 7 0.0372 -4.8110 0.2487 18 6 -0.6287 -6.1093 0.3795 19 6 -2.1454 -5.9078 0.3695 20 7 -2.8113 -7.2061 0.5009 21 8 -3.7477 -7.3352 1.2690 22 8 -2.4285 -8.1563 -0.1579 23 1 -0.4851 0.8401 -0.0004 24 1 3.9514 -2.4852 -0.0030 25 1 4.1583 -6.7282 0.4113 26 1 1.7012 -6.8541 0.4492 27 1 -0.4906 -4.0006 0.1726 28 1 -0.3310 -6.5774 1.3178 29 1 -0.3415 -6.7506 -0.4537 30 1 -2.4323 -5.2666 1.2030 31 1 -2.4435 -5.4395 -0.5685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905329303.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:11 Heat of formation + Delta-G solvation = -50.711567 kcal Electronic energy + Delta-G solvation = -19883.561547 eV Core-core repulsion = 16276.794965 eV Total energy + Delta-G solvation = -3606.766582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.19982 -42.34919 -39.42062 -37.04038 -36.60689 -35.55617 -32.50162 -32.12507 -29.45432 -28.18729 -25.55956 -25.45989 -23.11072 -21.69191 -21.26350 -18.99062 -18.75596 -18.35266 -17.96313 -17.46785 -16.18160 -15.94306 -15.35914 -15.28312 -14.93135 -14.45273 -14.27118 -13.77421 -13.65834 -13.39236 -12.61668 -12.53273 -12.27802 -12.08558 -11.67578 -11.60476 -11.42543 -11.28181 -11.21115 -10.98370 -10.70350 -10.53702 -9.75380 -9.55711 -8.99874 -7.93116 -6.74833 -6.63245 -4.19224 0.38892 1.44295 1.92136 2.04949 3.03321 3.05445 3.09771 3.59265 3.81932 3.93733 4.08935 4.28360 4.55057 4.79306 4.93156 5.10427 5.20545 5.32663 5.41504 5.67047 5.89740 6.09836 6.18883 6.38457 6.61628 6.84626 6.91822 7.08298 7.34939 7.42814 7.66704 7.81282 8.00082 8.83580 9.45803 10.54262 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.005522 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.934317 B = 5069.765669 C = 6939.865823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.388 4.388 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.127 3.873 11 C -0.241 4.241 12 C 0.096 3.904 13 F -0.155 7.155 14 C -0.198 4.198 15 C -0.136 4.136 16 C 0.143 3.857 17 N -0.745 5.745 18 C 0.131 3.869 19 C -0.026 4.026 20 N -0.012 5.012 21 O -0.163 6.163 22 O -0.157 6.157 23 H 0.271 0.729 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.412 0.588 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -8.268 0.486 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.464 4.464 8 H 0.111 0.889 9 O -0.080 6.080 10 C 0.072 3.928 11 C -0.262 4.262 12 C 0.075 3.925 13 F -0.134 7.134 14 C -0.218 4.218 15 C -0.160 4.160 16 C 0.044 3.956 17 N -0.383 5.383 18 C 0.004 3.996 19 C -0.144 4.144 20 N 0.510 4.490 21 O -0.382 6.382 22 O -0.378 6.378 23 H 0.081 0.919 24 H 0.158 0.842 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.249 0.751 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.180 -7.506 0.425 7.610 hybrid contribution 0.410 1.028 -0.021 1.106 sum -0.770 -6.478 0.404 6.536 Atomic orbital electron populations 1.69998 1.05939 1.27915 1.46041 1.25258 0.95900 0.98815 0.96318 0.85690 0.79021 0.79828 0.78859 1.19779 1.20193 1.19066 1.21309 0.91918 0.80435 1.52760 0.88948 1.83870 1.33801 1.11183 1.79156 1.18533 0.89452 0.87038 0.97813 1.20820 0.93373 0.98402 1.13594 1.17271 0.76005 0.94241 1.04964 1.91398 1.30123 1.97366 1.94474 1.20321 0.94304 0.95800 1.11381 1.19986 0.92780 0.95689 1.07548 1.16921 0.82556 0.91427 1.04693 1.43869 1.03167 1.06328 1.84973 1.21130 0.86068 0.88978 1.03385 1.24712 0.96968 0.83016 1.09691 1.44460 1.00660 1.04859 0.98982 1.94585 1.19928 1.90941 1.32697 1.94572 1.67550 1.32764 1.42900 0.91914 0.84179 0.86197 0.86021 0.75128 0.91374 0.89850 0.84218 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.28 13.67 55.48 0.76 -22.53 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.52 29.55 -169.99 -5.02 14.49 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.39 -10.07 9.49 30.88 0.29 -9.78 16 8 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 9 O -0.18 -4.46 9.00 -0.01 0.00 -4.46 16 10 C 0.13 2.79 6.66 -38.94 -0.26 2.53 16 11 C -0.24 -5.08 9.14 -39.36 -0.36 -5.44 16 12 C 0.10 1.84 7.29 -39.43 -0.29 1.55 16 13 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 14 C -0.20 -3.35 10.02 -39.48 -0.40 -3.74 16 15 C -0.14 -2.23 9.31 -39.41 -0.37 -2.60 16 16 C 0.14 2.64 6.67 -83.52 -0.56 2.09 16 17 N -0.75 -11.56 5.73 -58.46 -0.34 -11.89 16 18 C 0.13 1.52 4.81 -4.04 -0.02 1.50 16 19 C -0.03 -0.26 6.54 -4.04 -0.03 -0.28 16 20 N -0.01 -0.14 4.23 -10.61 -0.04 -0.19 16 21 O -0.16 -2.17 19.22 -29.46 -0.57 -2.74 16 22 O -0.16 -2.06 18.43 -29.46 -0.54 -2.61 16 23 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 25 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 26 H 0.12 1.64 6.73 -52.48 -0.35 1.28 16 27 H 0.41 6.80 7.84 -40.82 -0.32 6.48 16 28 H 0.07 0.78 7.94 -51.93 -0.41 0.36 16 29 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 30 H 0.14 1.23 8.11 -51.93 -0.42 0.81 16 31 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 287.50 15.07 4.33 4.33 Total: -1.00 -28.36 287.50 -5.91 -34.27 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -2.45 Total: 7.38 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.08 Total: -13.21 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.38 Total: -34.60 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -1.11 Total: -9.80 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.36 -5.91 -34.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905329303.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.443 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds