Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86807 * 119.99963 * 2 1 4 4 H 1.48504 * 109.46938 * 269.99580 * 3 2 1 5 5 H 1.48490 * 109.47182 * 30.00113 * 3 2 1 6 6 H 1.48499 * 109.46941 * 150.00087 * 3 2 1 7 7 C 1.38632 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34799 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.35798 * 116.99375 * 185.06092 * 9 7 2 11 11 C 1.38714 * 120.09250 * 354.40483 * 10 9 7 12 12 C 1.38352 * 119.98510 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.92325 * 180.02562 * 12 11 10 14 14 C 1.38526 * 120.15741 * 0.02562 * 12 11 10 15 15 C 1.38214 * 120.17700 * 359.67812 * 14 12 11 16 16 C 1.38720 * 120.01446 * 0.59332 * 15 14 12 17 17 N 1.39926 * 120.07846 * 179.69905 * 16 15 14 18 18 C 1.46497 * 120.00156 * 359.72887 * 17 16 15 19 19 C 1.52999 * 109.46963 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46905 * 180.02562 * 19 18 17 21 21 O 1.21801 * 119.99903 * 134.99989 * 20 19 18 22 22 O 1.21802 * 120.00081 * 314.99679 * 20 19 18 23 23 H 0.97010 * 120.00072 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00939 * 359.97438 * 11 10 9 25 25 H 1.08005 * 119.91637 * 180.02562 * 14 12 11 26 26 H 1.08003 * 119.99806 * 180.32604 * 15 14 12 27 27 H 0.97005 * 119.99887 * 179.73121 * 17 16 15 28 28 H 1.09002 * 109.47083 * 60.00400 * 18 17 16 29 29 H 1.08995 * 109.47755 * 300.00106 * 18 17 16 30 30 H 1.09003 * 109.47483 * 300.00170 * 19 18 17 31 31 H 1.08996 * 109.47479 * 60.00339 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2005 0.0010 9 8 1.3348 -2.3679 0.0016 10 6 2.0704 -3.5044 0.1088 11 6 3.4560 -3.4400 0.0942 12 6 4.2032 -4.5992 0.2030 13 9 5.5527 -4.5350 0.1891 14 6 3.5711 -5.8257 0.3262 15 6 2.1910 -5.8969 0.3477 16 6 1.4346 -4.7397 0.2334 17 7 0.0372 -4.8110 0.2487 18 6 -0.6287 -6.1093 0.3795 19 6 -2.1454 -5.9078 0.3695 20 7 -2.8113 -7.2061 0.5009 21 8 -3.7477 -7.3352 1.2690 22 8 -2.4285 -8.1563 -0.1579 23 1 -0.4851 0.8401 -0.0004 24 1 3.9514 -2.4852 -0.0030 25 1 4.1583 -6.7282 0.4113 26 1 1.7012 -6.8541 0.4492 27 1 -0.4906 -4.0006 0.1726 28 1 -0.3310 -6.5774 1.3178 29 1 -0.3415 -6.7506 -0.4537 30 1 -2.4323 -5.2666 1.2030 31 1 -2.4435 -5.4395 -0.5685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905329303.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = -68.066291 kcal Electronic energy + Delta-G solvation = -19884.314104 eV Core-core repulsion = 16276.794965 eV Total energy + Delta-G solvation = -3607.519139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.68661 -43.28932 -40.96826 -38.52520 -37.61184 -36.82669 -34.30749 -33.28548 -30.99100 -29.52929 -27.36743 -26.59885 -24.25096 -23.10320 -22.66106 -20.06536 -19.92981 -19.83042 -19.13746 -18.74116 -17.53422 -17.33873 -16.95909 -16.57222 -16.20091 -15.99815 -15.66887 -15.39826 -15.14962 -14.97345 -13.89161 -13.67121 -13.64744 -13.44828 -13.22980 -12.90227 -12.66298 -12.47144 -12.29690 -12.23321 -12.21370 -12.09109 -11.55192 -10.89383 -10.81239 -9.49547 -8.50594 -8.18954 -6.12685 -0.62905 0.41360 0.52060 0.54796 1.35642 1.41658 1.50119 2.13749 2.44098 2.71980 2.96436 3.06565 3.27050 3.32719 3.59143 3.78401 3.96315 4.21372 4.29314 4.39897 4.44556 4.65986 4.95607 5.05816 5.14719 5.27467 5.37783 5.41431 5.87327 5.96856 6.30051 6.40462 6.61502 6.96230 7.69110 8.70814 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.005522 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.934317 B = 5069.765669 C = 6939.865823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.011 4.011 3 Si 1.008 2.992 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.409 4.409 8 H 0.093 0.907 9 O -0.212 6.212 10 C 0.088 3.912 11 C -0.248 4.248 12 C 0.073 3.927 13 F -0.154 7.154 14 C -0.168 4.168 15 C -0.129 4.129 16 C 0.149 3.851 17 N -0.744 5.744 18 C 0.131 3.869 19 C -0.019 4.019 20 N -0.006 5.006 21 O -0.184 6.184 22 O -0.163 6.163 23 H 0.272 0.728 24 H 0.124 0.876 25 H 0.157 0.843 26 H 0.163 0.837 27 H 0.406 0.594 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -10.094 0.623 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.210 4.210 3 Si 0.828 3.172 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.111 0.889 9 O -0.119 6.119 10 C 0.035 3.965 11 C -0.269 4.269 12 C 0.052 3.948 13 F -0.133 7.133 14 C -0.188 4.188 15 C -0.152 4.152 16 C 0.048 3.952 17 N -0.380 5.380 18 C 0.006 3.994 19 C -0.136 4.136 20 N 0.514 4.486 21 O -0.400 6.400 22 O -0.385 6.385 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.175 0.825 26 H 0.180 0.820 27 H 0.241 0.759 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.169 0.831 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.634 -9.392 0.582 9.431 hybrid contribution 0.322 1.282 -0.063 1.324 sum -0.312 -8.109 0.519 8.132 Atomic orbital electron populations 1.70103 1.07406 1.28699 1.48531 1.26288 0.96814 1.01955 0.95964 0.84725 0.77860 0.75484 0.79122 1.19057 1.19538 1.18397 1.21634 0.92251 0.81443 1.53166 0.88928 1.83836 1.34490 1.11698 1.81861 1.18994 0.90017 0.87537 0.99909 1.20881 0.93638 0.98798 1.13565 1.17384 0.76127 0.94544 1.06721 1.91396 1.29923 1.97388 1.94609 1.20818 0.94843 0.95994 1.07114 1.20442 0.92552 0.96416 1.05804 1.17189 0.84111 0.90816 1.03124 1.43986 1.02236 1.07718 1.84020 1.21266 0.86785 0.87033 1.04323 1.24739 0.95723 0.81985 1.11178 1.44663 1.00368 1.05165 0.98366 1.94597 1.20820 1.91204 1.33332 1.94566 1.67507 1.33541 1.42866 0.91843 0.85819 0.82502 0.82006 0.75907 0.90306 0.88689 0.83088 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.82 13.67 21.61 0.30 -50.53 16 2 C -0.01 -0.60 5.49 84.83 0.47 -0.14 16 3 Si 1.01 40.90 29.55 68.60 2.03 42.93 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.41 -22.11 9.49 67.91 0.64 -21.47 16 8 H 0.09 4.78 5.21 -2.91 -0.02 4.77 16 9 O -0.21 -11.19 9.00 -22.95 -0.21 -11.39 16 10 C 0.09 3.93 6.66 22.69 0.15 4.08 16 11 C -0.25 -10.62 9.14 22.41 0.20 -10.41 16 12 C 0.07 2.70 7.29 22.37 0.16 2.86 16 13 F -0.15 -5.57 17.26 44.97 0.78 -4.79 16 14 C -0.17 -5.03 10.02 22.33 0.22 -4.81 16 15 C -0.13 -3.70 9.31 22.38 0.21 -3.50 16 16 C 0.15 5.25 6.67 38.27 0.26 5.51 16 17 N -0.74 -21.84 5.73 -338.87 -1.94 -23.78 16 18 C 0.13 2.63 4.81 86.38 0.42 3.04 16 19 C -0.02 -0.33 6.54 86.38 0.57 0.24 16 20 N -0.01 -0.13 4.23 -187.49 -0.79 -0.92 16 21 O -0.18 -4.62 19.22 18.88 0.36 -4.26 16 22 O -0.16 -3.87 18.43 18.88 0.35 -3.52 16 23 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 24 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 25 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 26 H 0.16 3.40 6.73 -2.91 -0.02 3.38 16 27 H 0.41 13.27 7.84 -92.70 -0.73 12.54 16 28 H 0.08 1.48 7.94 -2.39 -0.02 1.46 16 29 H 0.10 1.77 7.66 -2.39 -0.02 1.75 16 30 H 0.15 2.33 8.11 -2.39 -0.02 2.32 16 31 H 0.16 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -63.41 287.50 4.64 -58.78 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.47 Total: 22.09 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.30 Total: -24.60 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -2.44 Total: -75.23 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.50 Total: -19.18 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.79 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -63.41 4.64 -58.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905329303.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.291 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds