Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47457 * 269.99750 * 3 2 1 5 5 H 1.48496 * 109.47419 * 29.99753 * 3 2 1 6 6 H 1.48506 * 109.47258 * 149.99885 * 3 2 1 7 7 C 1.37882 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00109 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99901 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47364 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00311 * 180.02562 * 11 10 9 14 14 C 1.39467 * 120.00244 * 185.08744 * 13 11 10 15 15 C 1.38817 * 119.65404 * 174.91052 * 14 13 11 16 16 C 1.38941 * 119.04588 * 179.97438 * 15 14 13 17 17 O 1.35767 * 120.81769 * 179.97438 * 16 15 14 18 18 C 1.39530 * 118.37476 * 359.97438 * 16 15 14 19 19 Cl 1.73601 * 120.39276 * 180.02562 * 18 16 15 20 20 C 1.37935 * 119.22016 * 0.28093 * 18 16 15 21 21 N 1.32043 * 120.88503 * 359.41922 * 20 18 16 22 22 H 0.97003 * 119.99584 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46758 * 60.00117 * 9 7 2 24 24 H 1.09000 * 109.47583 * 300.00762 * 9 7 2 25 25 H 1.09004 * 109.47000 * 59.99770 * 10 9 7 26 26 H 1.09000 * 109.47182 * 300.00757 * 10 9 7 27 27 H 0.97001 * 119.99616 * 5.08508 * 13 11 10 28 28 H 1.08001 * 120.47685 * 359.95816 * 15 14 13 29 29 H 0.96697 * 113.99920 * 270.02481 * 17 16 15 30 30 H 1.07994 * 119.55839 * 179.72568 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5284 -2.6367 0.0001 12 8 6.1349 -1.5864 -0.0004 13 7 6.2023 -3.8039 -0.0003 14 6 7.5929 -3.8064 0.1069 15 6 8.2714 -5.0128 0.2125 16 6 9.6568 -5.0005 0.3180 17 8 10.3566 -6.1591 0.4237 18 6 10.3113 -3.7683 0.3128 19 17 12.0409 -3.6919 0.4412 20 6 9.5676 -2.6112 0.2098 21 7 8.2521 -2.6581 0.1052 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6577 -3.1507 -0.8897 26 1 3.6584 -3.1504 0.8902 27 1 5.7201 -4.6423 -0.0751 28 1 7.7303 -5.9474 0.2129 29 1 10.4916 -6.4554 1.3342 30 1 10.0682 -1.6543 0.2097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908056975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = -41.326725 kcal Electronic energy + Delta-G solvation = -17412.218982 eV Core-core repulsion = 14234.195732 eV Total energy + Delta-G solvation = -3178.023249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07628 -39.34805 -37.67194 -36.78957 -34.79331 -33.56427 -31.47068 -31.44742 -30.03227 -26.38686 -24.19173 -23.51462 -21.43370 -19.98275 -19.14014 -17.69064 -17.16143 -16.77372 -16.70536 -15.72596 -15.58985 -15.13796 -14.45984 -14.13128 -13.95714 -13.57641 -13.44489 -12.89484 -12.61221 -12.19070 -11.75575 -11.51767 -11.26623 -11.01885 -10.56565 -10.26935 -10.16354 -10.02100 -9.82645 -9.77032 -9.24707 -9.07838 -8.54903 -8.41512 -6.06914 -4.06439 0.64624 0.73948 1.80888 2.78198 2.84138 3.36151 3.42940 3.43168 3.53458 3.63467 4.17246 4.47810 4.55058 4.56199 5.00420 5.24848 5.28559 5.30309 5.41682 5.81579 5.93104 5.96038 6.44123 6.54722 7.00388 7.11297 7.28490 7.35290 7.72919 7.81790 8.38598 8.48683 8.95240 9.55727 11.05730 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.043489 B = 0.003528 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.683917 B = 7935.368119 C = 8549.216575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.119 4.119 11 C 0.497 3.503 12 O -0.465 6.465 13 N -0.666 5.666 14 C 0.392 3.608 15 C -0.233 4.233 16 C 0.190 3.810 17 O -0.481 6.481 18 C -0.161 4.161 19 Cl -0.052 7.052 20 C 0.168 3.832 21 N -0.468 5.468 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.419 0.581 28 H 0.150 0.850 29 H 0.400 0.600 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.124 -13.216 2.326 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.159 4.159 11 C 0.285 3.715 12 O -0.332 6.332 13 N -0.313 5.313 14 C 0.160 3.840 15 C -0.258 4.258 16 C 0.136 3.864 17 O -0.292 6.292 18 C -0.193 4.193 19 Cl -0.024 7.024 20 C 0.008 3.992 21 N -0.184 5.184 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.256 0.744 28 H 0.168 0.832 29 H 0.258 0.742 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 20.939 -11.468 1.669 23.932 hybrid contribution 0.742 -0.514 0.501 1.032 sum 21.681 -11.982 2.169 24.866 Atomic orbital electron populations 1.69909 1.06313 1.27060 1.50806 1.24968 0.94717 0.99270 0.94225 0.86797 0.80620 0.83346 0.78817 1.20182 1.21398 1.18484 1.21066 0.89094 0.94626 1.51700 0.90867 1.19399 0.96623 0.89815 0.97889 1.21737 0.86526 1.03869 1.03777 1.22008 0.91772 0.82512 0.75194 1.90780 1.69892 1.30260 1.42250 1.44212 1.02925 1.11970 1.72161 1.18561 0.85794 0.88761 0.90895 1.21728 0.93369 0.98885 1.11805 1.18097 0.88751 0.84620 0.94890 1.84768 1.74519 1.36955 1.32952 1.22459 0.86806 0.95442 1.14569 1.98361 1.08730 1.98629 1.96683 1.22715 0.88129 0.97201 0.91152 1.68007 1.07907 1.26581 1.15867 0.92646 0.95646 0.96088 0.89149 0.89096 0.74390 0.83187 0.74162 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.53 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.00 0.02 3.33 -27.89 -0.09 -0.08 16 10 C -0.12 -2.15 5.64 -27.89 -0.16 -2.30 16 11 C 0.50 8.64 7.79 -10.99 -0.09 8.56 16 12 O -0.46 -10.05 14.25 5.55 0.08 -9.97 16 13 N -0.67 -8.50 5.39 -11.45 -0.06 -8.56 16 14 C 0.39 5.17 7.42 -154.67 -1.15 4.02 16 15 C -0.23 -2.29 9.90 -39.11 -0.39 -2.68 16 16 C 0.19 1.86 6.76 -38.84 -0.26 1.59 16 17 O -0.48 -3.71 13.08 -19.01 -0.25 -3.96 16 18 C -0.16 -1.72 6.36 -39.21 -0.25 -1.97 16 19 Cl -0.05 -0.50 28.61 -51.86 -1.48 -1.98 16 20 C 0.17 2.06 10.97 -17.57 -0.19 1.87 16 21 N -0.47 -7.23 7.89 -12.41 -0.10 -7.33 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 24 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 25 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.42 3.54 8.70 -40.82 -0.36 3.18 16 28 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.40 1.20 9.06 45.56 0.41 1.61 16 30 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 285.82 15.07 4.31 4.31 Total: -1.00 -35.75 285.82 -6.39 -42.14 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -1.98 Total: -1.35 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.01 Total: -4.08 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.61 Total: -42.73 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.17 Total: -13.93 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.75 -6.39 -42.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908056975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.815 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds