Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47457 * 269.99750 * 3 2 1 5 5 H 1.48496 * 109.47419 * 29.99753 * 3 2 1 6 6 H 1.48506 * 109.47258 * 149.99885 * 3 2 1 7 7 C 1.37882 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00109 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99901 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47364 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00311 * 180.02562 * 11 10 9 14 14 C 1.39467 * 120.00244 * 185.08744 * 13 11 10 15 15 C 1.38817 * 119.65404 * 174.91052 * 14 13 11 16 16 C 1.38941 * 119.04588 * 179.97438 * 15 14 13 17 17 O 1.35767 * 120.81769 * 179.97438 * 16 15 14 18 18 C 1.39530 * 118.37476 * 359.97438 * 16 15 14 19 19 Cl 1.73601 * 120.39276 * 180.02562 * 18 16 15 20 20 C 1.37935 * 119.22016 * 0.28093 * 18 16 15 21 21 N 1.32043 * 120.88503 * 359.41922 * 20 18 16 22 22 H 0.97003 * 119.99584 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46758 * 60.00117 * 9 7 2 24 24 H 1.09000 * 109.47583 * 300.00762 * 9 7 2 25 25 H 1.09004 * 109.47000 * 59.99770 * 10 9 7 26 26 H 1.09000 * 109.47182 * 300.00757 * 10 9 7 27 27 H 0.97001 * 119.99616 * 5.08508 * 13 11 10 28 28 H 1.08001 * 120.47685 * 359.95816 * 15 14 13 29 29 H 0.96697 * 113.99920 * 270.02481 * 17 16 15 30 30 H 1.07994 * 119.55839 * 179.72568 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5284 -2.6367 0.0001 12 8 6.1349 -1.5864 -0.0004 13 7 6.2023 -3.8039 -0.0003 14 6 7.5929 -3.8064 0.1069 15 6 8.2714 -5.0128 0.2125 16 6 9.6568 -5.0005 0.3180 17 8 10.3566 -6.1591 0.4237 18 6 10.3113 -3.7683 0.3128 19 17 12.0409 -3.6919 0.4412 20 6 9.5676 -2.6112 0.2098 21 7 8.2521 -2.6581 0.1052 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6577 -3.1507 -0.8897 26 1 3.6584 -3.1504 0.8902 27 1 5.7201 -4.6423 -0.0751 28 1 7.7303 -5.9474 0.2129 29 1 10.4916 -6.4554 1.3342 30 1 10.0682 -1.6543 0.2097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908056975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = -68.476534 kcal Electronic energy + Delta-G solvation = -17413.396286 eV Core-core repulsion = 14234.195732 eV Total energy + Delta-G solvation = -3179.200553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02974 -40.47806 -38.48138 -37.58530 -35.93501 -35.52560 -33.35327 -32.27545 -31.09482 -28.13538 -25.10428 -24.66404 -22.94253 -21.36355 -19.98181 -19.30966 -18.22065 -18.05622 -17.55196 -16.94632 -16.81347 -16.23208 -16.04742 -15.40877 -15.04538 -14.92977 -14.63723 -14.27824 -14.23865 -13.42328 -13.23683 -12.88659 -12.46992 -12.12807 -12.06809 -11.95617 -11.76224 -11.61566 -11.40057 -11.16458 -10.77320 -10.61617 -10.24273 -9.35349 -8.31044 -6.33611 -0.24962 -0.04459 0.99443 1.33866 1.36406 1.50836 1.60550 1.78101 2.35410 2.56572 2.86671 3.05168 3.26759 3.68639 3.78300 3.98856 4.26484 4.42548 4.49220 4.54608 4.63479 4.93906 5.01532 5.34297 5.44484 5.50761 5.61348 6.10159 6.24445 6.56937 6.72975 6.84388 7.25779 7.31995 8.84469 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.043489 B = 0.003528 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.683917 B = 7935.368119 C = 8549.216575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.003 3.997 10 C -0.112 4.112 11 C 0.506 3.494 12 O -0.516 6.516 13 N -0.648 5.648 14 C 0.367 3.633 15 C -0.212 4.212 16 C 0.197 3.803 17 O -0.481 6.481 18 C -0.157 4.157 19 Cl -0.042 7.042 20 C 0.153 3.847 21 N -0.515 5.515 22 H 0.267 0.733 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.440 0.560 28 H 0.186 0.814 29 H 0.423 0.577 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.884 -15.017 2.485 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.035 4.035 10 C -0.151 4.151 11 C 0.294 3.706 12 O -0.387 6.387 13 N -0.297 5.297 14 C 0.136 3.864 15 C -0.235 4.235 16 C 0.143 3.857 17 O -0.295 6.295 18 C -0.189 4.189 19 Cl -0.013 7.013 20 C -0.006 4.006 21 N -0.232 5.232 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.281 0.719 28 H 0.203 0.797 29 H 0.285 0.715 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 22.734 -13.343 1.844 26.425 hybrid contribution 0.306 -0.114 0.471 0.573 sum 23.040 -13.457 2.316 26.782 Atomic orbital electron populations 1.70019 1.07749 1.28055 1.52575 1.25774 0.95449 1.02755 0.94375 0.85866 0.79258 0.79735 0.79070 1.19512 1.20498 1.18589 1.21416 0.91141 0.93783 1.50147 0.92769 1.19247 0.94038 0.93737 0.96492 1.21538 0.87528 1.00206 1.05860 1.21662 0.91342 0.83057 0.74566 1.90768 1.70634 1.32309 1.45034 1.43729 1.03195 1.11440 1.71301 1.18744 0.85581 0.89496 0.92624 1.21930 0.93369 0.98870 1.09376 1.18107 0.88841 0.84894 0.93879 1.84736 1.73992 1.35731 1.35067 1.22525 0.87341 0.95539 1.13454 1.98368 1.07743 1.98634 1.96559 1.22797 0.87541 0.98271 0.91979 1.67853 1.09445 1.28613 1.17271 0.92407 0.97126 0.97280 0.87061 0.87059 0.71889 0.79674 0.71491 0.80628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 2 C 0.01 0.83 5.47 84.66 0.46 1.30 16 3 Si 0.94 46.46 27.47 68.60 1.88 48.35 16 4 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 7 C -0.53 -29.61 9.66 25.60 0.25 -29.36 16 8 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 9 C 0.00 0.14 3.33 29.85 0.10 0.24 16 10 C -0.11 -3.88 5.64 29.85 0.17 -3.71 16 11 C 0.51 17.10 7.79 87.66 0.68 17.79 16 12 O -0.52 -22.49 14.25 -3.04 -0.04 -22.53 16 13 N -0.65 -15.24 5.39 -308.53 -1.66 -16.90 16 14 C 0.37 9.02 7.42 132.82 0.99 10.00 16 15 C -0.21 -3.46 9.90 22.58 0.22 -3.23 16 16 C 0.20 3.24 6.76 22.75 0.15 3.40 16 17 O -0.48 -5.58 13.08 -90.94 -1.19 -6.77 16 18 C -0.16 -3.06 6.36 22.51 0.14 -2.92 16 19 Cl -0.04 -0.71 28.61 -2.72 -0.08 -0.79 16 20 C 0.15 3.67 10.97 84.59 0.93 4.60 16 21 N -0.52 -15.73 7.89 -193.16 -1.52 -17.26 16 22 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 23 H 0.01 0.53 7.15 -2.39 -0.02 0.51 16 24 H 0.01 0.44 7.53 -2.39 -0.02 0.43 16 25 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 26 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 27 H 0.44 6.06 8.70 -92.71 -0.81 5.25 16 28 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.42 0.81 9.06 -74.06 -0.67 0.14 16 30 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -78.45 285.82 1.45 -77.00 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -0.33 Total: -1.03 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 4.09 Total: -1.90 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -2.89 Total: -92.32 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.23 Total: -29.30 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.88 Total: 48.35 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -78.45 1.45 -77.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908056975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.520 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds