Wall clock time and date at job start Mon Mar 30 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47568 * 2 1 4 4 O 1.42899 * 109.47233 * 120.00019 * 2 1 3 5 5 C 1.35927 * 116.99932 * 274.99904 * 4 2 1 6 6 C 1.38703 * 120.05865 * 5.48767 * 5 4 2 7 7 C 1.38152 * 119.95277 * 180.02562 * 6 5 4 8 8 C 1.38273 * 120.08147 * 359.97438 * 7 6 5 9 9 C 1.38253 * 120.11881 * 359.97438 * 8 7 6 10 10 C 1.38262 * 120.03734 * 0.27603 * 9 8 7 11 11 Cl 1.73599 * 120.03238 * 179.74631 * 10 9 8 12 12 C 1.50705 * 109.46793 * 240.00062 * 2 1 3 13 13 O 1.21209 * 119.99765 * 244.99722 * 12 2 1 14 14 O 1.34312 * 120.00076 * 65.00327 * 12 2 1 15 15 C 1.34919 * 116.99829 * 179.97438 * 14 12 2 16 16 H 1.08003 * 120.00000 * 359.97438 * 15 14 12 17 17 C 1.38748 * 120.00012 * 179.97438 * 15 14 12 18 18 N 1.31447 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00231 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46783 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47021 * 119.99820 * 19 17 15 22 22 H 1.48497 * 109.47027 * 239.99922 * 19 17 15 23 23 H 1.09000 * 109.46924 * 300.00299 * 1 2 3 24 24 H 1.09007 * 109.46818 * 59.99424 * 1 2 3 25 25 H 1.08993 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.02252 * 359.97438 * 6 5 4 27 27 H 1.08005 * 119.96240 * 180.02562 * 7 6 5 28 28 H 1.08001 * 119.94180 * 180.02562 * 8 7 6 29 29 H 1.07994 * 119.98035 * 179.97438 * 9 8 7 30 30 H 0.96997 * 119.99929 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1126 0.0628 2.3043 6 6 1.6595 1.3735 2.3283 7 6 1.7690 2.1201 3.4855 8 6 2.3292 1.5621 4.6199 9 6 2.7808 0.2556 4.5998 10 6 2.6784 -0.4944 3.4429 11 17 3.2516 -2.1328 3.4159 12 6 2.0323 -0.7104 -1.2305 13 8 2.6526 -1.7461 -1.1216 14 8 1.7927 -0.1959 -2.4479 15 6 2.2703 -0.8813 -3.5073 16 1 2.8179 -1.7996 -3.3541 17 6 2.0582 -0.4064 -4.7936 18 7 1.3914 0.7109 -4.9801 19 14 2.7189 -1.3557 -6.2606 20 1 3.4265 -2.5716 -5.7853 21 1 1.5914 -1.7524 -7.1420 22 1 3.6633 -0.4979 -7.0206 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.2223 1.8103 1.4427 27 1 1.4159 3.1406 3.5044 28 1 2.4133 2.1477 5.5234 29 1 3.2183 -0.1778 5.4870 30 1 1.2434 1.0431 -5.8793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914640314.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:05 Heat of formation + Delta-G solvation = -114.806120 kcal Electronic energy + Delta-G solvation = -17966.102532 eV Core-core repulsion = 14752.600225 eV Total energy + Delta-G solvation = -3213.502306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76992 -40.76752 -38.72152 -37.34401 -37.17207 -34.41850 -33.26476 -31.72128 -30.65148 -27.81367 -25.80887 -24.06567 -23.41231 -21.70759 -20.00174 -19.53835 -18.56215 -17.57029 -17.13687 -17.03471 -16.38929 -16.16989 -16.06900 -15.58089 -14.99714 -14.81767 -14.26796 -14.06931 -13.70494 -13.37309 -13.19477 -13.02922 -12.80976 -12.55726 -12.42591 -12.24971 -12.18022 -12.08786 -12.01568 -11.74772 -11.03461 -10.73743 -9.89839 -9.25369 -8.59339 -6.39672 0.14045 0.29330 1.17725 1.20869 1.30478 1.45843 1.53659 1.61267 2.20863 2.64221 2.77693 2.91387 3.57260 3.79316 3.81877 3.92773 4.17252 4.33869 4.36593 4.45955 4.63018 4.68830 4.79328 5.05270 5.11426 5.12623 5.27566 5.44130 5.69739 5.76713 6.17488 6.54602 6.85465 7.63130 8.60754 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.031632 B = 0.004534 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.967417 B = 6174.498447 C = 6788.301753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 H 0.122 0.878 4 O -0.305 6.305 5 C 0.110 3.890 6 C -0.208 4.208 7 C -0.067 4.067 8 C -0.138 4.138 9 C -0.074 4.074 10 C -0.093 4.093 11 Cl -0.078 7.078 12 C 0.395 3.605 13 O -0.570 6.570 14 O -0.228 6.228 15 C -0.425 4.425 16 H 0.079 0.921 17 C 0.004 3.996 18 N -0.895 5.895 19 Si 1.016 2.984 20 H -0.269 1.269 21 H -0.257 1.257 22 H -0.257 1.257 23 H 0.107 0.893 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.150 0.850 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.160 0.840 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 5.780 17.522 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.140 0.860 4 O -0.219 6.219 5 C 0.064 3.936 6 C -0.226 4.226 7 C -0.085 4.085 8 C -0.156 4.156 9 C -0.092 4.092 10 C -0.120 4.120 11 Cl -0.049 7.049 12 C 0.241 3.759 13 O -0.467 6.467 14 O -0.136 6.136 15 C -0.500 4.500 16 H 0.096 0.904 17 C -0.198 4.198 18 N -0.532 5.532 19 Si 0.835 3.165 20 H -0.193 1.193 21 H -0.181 1.181 22 H -0.181 1.181 23 H 0.125 0.875 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.168 0.832 27 H 0.185 0.815 28 H 0.188 0.812 29 H 0.177 0.823 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.206 5.305 17.324 18.159 hybrid contribution 0.406 -0.833 -0.942 1.321 sum -0.800 4.472 16.383 17.001 Atomic orbital electron populations 1.22243 0.89958 1.04016 1.05466 1.21547 0.97123 0.95890 0.79799 0.86050 1.86213 1.81441 1.37917 1.16291 1.19179 0.96885 0.91875 0.85642 1.21614 1.06298 0.92368 1.02351 1.21512 0.95155 1.00897 0.90907 1.21501 0.99648 0.94135 1.00307 1.21266 0.98132 0.94444 0.95401 1.20598 1.07840 0.88303 0.95256 1.98364 1.87747 1.20051 1.98781 1.23756 0.80446 0.85178 0.86474 1.90567 1.42152 1.26307 1.87635 1.83851 1.66706 1.49806 1.13211 1.21459 1.37423 1.08013 0.83132 0.90365 1.26480 0.95864 0.97299 1.00125 1.70051 1.37953 1.20765 1.24398 0.84593 0.78679 0.77723 0.75497 1.19278 1.18102 1.18124 0.87478 0.89371 0.92187 0.83232 0.81532 0.81180 0.82292 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.15 71.98 0.66 -4.36 16 2 C 0.11 4.37 2.75 29.85 0.08 4.46 16 3 H 0.12 4.03 6.31 -2.39 -0.02 4.01 16 4 O -0.30 -11.92 8.80 -73.73 -0.65 -12.57 16 5 C 0.11 3.38 6.59 22.52 0.15 3.53 16 6 C -0.21 -4.78 8.25 22.36 0.18 -4.59 16 7 C -0.07 -1.07 10.04 22.26 0.22 -0.84 16 8 C -0.14 -2.00 10.04 22.28 0.22 -1.78 16 9 C -0.07 -1.44 9.83 22.28 0.22 -1.22 16 10 C -0.09 -2.62 6.33 22.41 0.14 -2.48 16 11 Cl -0.08 -2.45 28.50 -2.72 -0.08 -2.53 16 12 C 0.39 20.81 7.24 71.24 0.52 21.33 16 13 O -0.57 -34.07 15.74 27.20 0.43 -33.64 16 14 O -0.23 -13.36 9.74 14.87 0.14 -13.21 16 15 C -0.42 -26.00 9.64 67.94 0.66 -25.34 16 16 H 0.08 4.96 6.86 -2.91 -0.02 4.94 16 17 C 0.00 0.20 5.49 84.87 0.47 0.67 16 18 N -0.89 -51.56 13.67 21.62 0.30 -51.27 16 19 Si 1.02 43.29 29.55 68.60 2.03 45.31 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 H 0.11 2.50 6.91 -2.39 -0.02 2.48 16 24 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.15 3.10 5.43 -2.91 -0.02 3.08 16 27 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 28 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.28 14.59 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -77.03 286.95 6.86 -70.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.17 Total: 8.38 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 3.52 Total: -10.64 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.30 Total: -51.27 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -0.08 Total: -59.42 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.08 Total: -2.53 kcal Total: -77.03 6.86 -70.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914640314.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.635 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds