Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48492 * 109.47202 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47004 * 30.00090 * 3 2 1 6 6 H 1.48502 * 109.46925 * 149.99860 * 3 2 1 7 7 C 1.38823 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99620 * 359.97438 * 7 2 1 9 9 O 1.34841 * 120.00183 * 180.02562 * 7 2 1 10 10 C 1.34760 * 116.99910 * 180.02562 * 9 7 2 11 11 O 1.21529 * 119.99820 * 359.97438 * 10 9 7 12 12 C 1.47496 * 119.99634 * 180.02562 * 10 9 7 13 13 C 1.40194 * 120.86187 * 179.97438 * 12 10 9 14 14 N 1.31932 * 119.00375 * 179.97438 * 13 12 10 15 15 C 1.32734 * 120.89862 * 0.02562 * 14 13 12 16 16 C 1.48164 * 119.03596 * 179.97438 * 15 14 13 17 17 C 1.39465 * 120.13553 * 0.02562 * 16 15 14 18 18 C 1.37985 * 119.86584 * 180.02562 * 17 16 15 19 19 C 1.38345 * 120.13301 * 359.97287 * 18 17 16 20 20 C 1.38342 * 120.27122 * 0.02562 * 19 18 17 21 21 C 1.37987 * 120.13186 * 0.02562 * 20 19 18 22 22 N 1.32734 * 121.92385 * 0.25141 * 15 14 13 23 23 C 1.31930 * 120.89748 * 359.47986 * 22 15 14 24 24 H 0.96997 * 119.99696 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.49765 * 359.95418 * 13 12 10 26 26 H 1.08003 * 120.06588 * 0.02562 * 17 16 15 27 27 H 1.07999 * 119.92736 * 180.24999 * 18 17 16 28 28 H 1.08005 * 119.86260 * 179.97438 * 19 18 17 29 29 H 1.07995 * 119.93825 * 180.02562 * 20 19 18 30 30 H 1.07998 * 120.06695 * 179.97438 * 21 20 19 31 31 H 1.08001 * 120.49465 * 180.27413 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0082 -1.2022 -0.0005 8 1 1.4681 -2.1375 -0.0005 9 8 3.3566 -1.2023 0.0000 10 6 3.9684 -2.4030 -0.0011 11 8 3.3064 -3.4222 -0.0020 12 6 5.4413 -2.4802 -0.0001 13 6 6.0965 -3.7196 -0.0006 14 7 7.4156 -3.7458 -0.0002 15 6 8.1197 -2.6207 0.0013 16 6 9.5993 -2.6983 0.0024 17 6 10.2354 -3.9395 0.0012 18 6 11.6136 -4.0053 0.0028 19 6 12.3644 -2.8433 0.0048 20 6 11.7393 -1.6091 0.0060 21 6 10.3617 -1.5304 0.0055 22 7 7.5371 -1.4281 0.0074 23 6 6.2226 -1.3162 0.0019 24 1 -0.4849 0.8400 0.0004 25 1 5.5300 -4.6390 -0.0011 26 1 9.6503 -4.8473 -0.0008 27 1 12.1072 -4.9659 -0.0022 28 1 13.4430 -2.8999 0.0065 29 1 12.3306 -0.7055 0.0072 30 1 9.8748 -0.5664 0.0068 31 1 5.7553 -0.3425 0.0024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921211750.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -18.719968 kcal Electronic energy + Delta-G solvation = -18707.333859 eV Core-core repulsion = 15532.723762 eV Total energy + Delta-G solvation = -3174.610097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.41229 -41.04435 -39.74282 -37.56925 -35.12834 -34.62567 -34.25309 -31.84835 -31.38240 -28.07964 -26.24424 -25.84846 -23.23487 -23.13956 -22.15048 -20.28759 -19.41581 -18.91747 -18.27419 -17.30671 -17.01383 -17.00792 -16.05124 -15.99070 -15.75833 -15.53653 -14.83526 -14.70985 -14.52972 -14.28350 -14.19848 -13.73655 -13.37825 -12.94195 -12.48840 -12.35037 -12.24079 -12.14082 -11.98984 -11.89169 -11.33820 -11.25912 -10.88600 -10.53781 -9.87174 -9.59905 -8.61048 -6.46047 -1.11974 -0.18681 0.40719 0.49675 1.33380 1.34365 1.52341 1.61719 2.05234 2.24994 2.48114 2.54656 2.82095 2.88862 3.00303 3.29115 3.61706 3.87961 4.07344 4.14796 4.20053 4.32293 4.54482 4.55897 4.73511 4.90030 5.02888 5.16755 5.35947 5.48327 5.53896 5.59133 5.65895 5.81343 6.02585 6.37612 6.70936 6.72533 7.41548 8.50864 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035276 B = 0.004009 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.546401 B = 6983.314112 C = 7767.017852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.243 1.243 7 C -0.405 4.405 8 H 0.064 0.936 9 O -0.240 6.240 10 C 0.463 3.537 11 O -0.562 6.562 12 C -0.224 4.224 13 C 0.217 3.783 14 N -0.518 5.518 15 C 0.367 3.633 16 C -0.081 4.081 17 C -0.078 4.078 18 C -0.133 4.133 19 C -0.089 4.089 20 C -0.133 4.133 21 C -0.077 4.077 22 N -0.521 5.521 23 C 0.208 3.792 24 H 0.293 0.707 25 H 0.194 0.806 26 H 0.134 0.866 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.357 -1.276 0.022 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.166 1.166 7 C -0.480 4.480 8 H 0.082 0.918 9 O -0.149 6.149 10 C 0.310 3.690 11 O -0.459 6.459 12 C -0.229 4.229 13 C 0.050 3.950 14 N -0.232 5.232 15 C 0.105 3.895 16 C -0.083 4.083 17 C -0.097 4.097 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.150 4.150 21 C -0.097 4.097 22 N -0.234 5.234 23 C 0.041 3.959 24 H 0.103 0.897 25 H 0.211 0.789 26 H 0.152 0.848 27 H 0.172 0.828 28 H 0.176 0.824 29 H 0.171 0.829 30 H 0.152 0.848 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 26.934 -1.462 0.033 26.973 hybrid contribution -2.021 0.259 -0.020 2.038 sum 24.913 -1.203 0.013 24.942 Atomic orbital electron populations 1.69669 1.07680 1.30609 1.46608 1.25589 0.95949 1.02751 0.93830 0.85160 0.79456 0.75630 0.80111 1.18169 1.18960 1.16571 1.20390 0.77122 0.96170 1.54358 0.91850 1.83490 1.22496 1.31498 1.77375 1.20672 0.88332 0.82094 0.77893 1.90680 1.67339 1.36769 1.51117 1.20890 0.91116 0.98422 1.12517 1.23605 0.89406 0.97432 0.84563 1.68563 1.06898 1.31232 1.16460 1.22142 0.95873 0.83892 0.87558 1.18250 0.86054 0.95902 1.08128 1.21491 0.95767 0.96594 0.95873 1.21473 0.92592 1.00457 1.00505 1.21812 1.01841 0.91835 0.95223 1.21473 0.93394 0.99667 1.00503 1.21498 0.94698 0.97699 0.95825 1.68508 1.11239 1.27408 1.16246 1.23860 0.88234 0.99301 0.84534 0.89734 0.78920 0.84821 0.82820 0.82383 0.82853 0.84826 0.78798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.27 13.96 21.64 0.30 -52.97 16 2 C 0.02 1.14 5.50 84.90 0.47 1.61 16 3 Si 0.98 41.37 28.62 68.60 1.96 43.33 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.24 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.41 -24.19 10.11 67.96 0.69 -23.50 16 8 H 0.06 4.31 7.09 -2.91 -0.02 4.29 16 9 O -0.24 -12.39 7.91 11.19 0.09 -12.30 16 10 C 0.46 22.02 7.84 70.26 0.55 22.57 16 11 O -0.56 -30.21 15.68 19.74 0.31 -29.90 16 12 C -0.22 -8.27 5.91 -19.89 -0.12 -8.39 16 13 C 0.22 7.09 10.87 85.15 0.93 8.02 16 14 N -0.52 -15.85 9.42 -188.09 -1.77 -17.62 16 15 C 0.37 10.95 7.55 137.41 1.04 11.99 16 16 C -0.08 -1.99 5.88 -20.05 -0.12 -2.10 16 17 C -0.08 -1.57 9.56 22.51 0.22 -1.36 16 18 C -0.13 -1.86 10.03 22.24 0.22 -1.64 16 19 C -0.09 -1.05 10.04 22.32 0.22 -0.82 16 20 C -0.13 -1.88 10.03 22.23 0.22 -1.66 16 21 C -0.08 -1.58 9.56 22.51 0.22 -1.37 16 22 N -0.52 -16.03 9.42 -188.10 -1.77 -17.80 16 23 C 0.21 6.80 10.90 85.15 0.93 7.73 16 24 H 0.29 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.19 5.79 7.74 -2.91 -0.02 5.77 16 26 H 0.13 2.74 7.50 -2.91 -0.02 2.72 16 27 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 28 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 29 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.13 2.78 7.50 -2.91 -0.02 2.75 16 31 H 0.20 5.83 7.70 -2.91 -0.02 5.80 16 Total: -1.00 -70.89 290.13 5.75 -65.14 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.17 Total: 11.05 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.46 Total: 11.07 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.24 Total: -88.40 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: 0.40 Total: -42.20 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.96 Total: 43.33 kcal Total: -70.89 5.75 -65.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921211750.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.418 kcal (2) G-P(sol) polarization free energy of solvation -70.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds