Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47141 * 239.99649 * 3 2 1 5 5 H 1.48501 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 119.99922 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00098 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99380 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00131 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99660 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00071 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47272 * 179.97438 * 14 13 11 16 16 C 1.38344 * 119.98028 * 94.71985 * 15 14 13 17 17 N 1.32144 * 120.01716 * 180.27311 * 16 15 14 18 18 C 1.32245 * 119.98439 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 120.01974 * 180.02562 * 18 17 16 20 20 C 1.38526 * 119.96318 * 359.97438 * 18 17 16 21 21 N 1.32106 * 119.98373 * 0.02562 * 20 18 17 22 22 H 0.97001 * 120.00459 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46716 * 60.00023 * 9 7 2 24 24 H 1.08997 * 109.46886 * 300.00088 * 9 7 2 25 25 H 0.96988 * 120.00235 * 0.02562 * 10 9 7 26 26 H 0.96996 * 119.99576 * 359.97438 * 13 11 10 27 27 H 1.09003 * 109.46718 * 59.99376 * 14 13 11 28 28 H 1.08999 * 109.46721 * 300.00029 * 14 13 11 29 29 H 1.08002 * 119.99617 * 0.25861 * 16 15 14 30 30 H 1.08002 * 120.00299 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7539 -4.8833 0.0019 12 8 0.5586 -5.1055 0.0029 13 7 2.6298 -5.9077 0.0022 14 6 2.1416 -7.2890 0.0032 15 6 3.3137 -8.2361 0.0027 16 6 3.7903 -8.7468 1.1968 17 7 4.8215 -9.5732 1.1977 18 6 5.3982 -9.9116 0.0567 19 17 6.7526 -10.9977 0.0567 20 6 4.9203 -9.3999 -1.1386 21 7 3.8894 -8.5738 -1.1378 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8919 25 1 3.1568 -3.4353 0.0010 26 1 3.5834 -5.7304 0.0017 27 1 1.5356 -7.4607 -0.8865 28 1 1.5363 -7.4597 0.8935 29 1 3.3198 -8.4699 2.1286 30 1 5.3911 -9.6755 -2.0707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922229927.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = 10.024735 kcal Electronic energy + Delta-G solvation = -17047.000500 eV Core-core repulsion = 13903.496768 eV Total energy + Delta-G solvation = -3143.503732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.67962 -39.21871 -37.34146 -35.42348 -34.50677 -34.03212 -32.43300 -31.65860 -27.88411 -26.40283 -25.29664 -23.30894 -22.28383 -20.28960 -18.42382 -18.33560 -17.81245 -16.73750 -15.95735 -15.78066 -15.32721 -14.95512 -14.64363 -14.45645 -13.71678 -13.28589 -13.08303 -12.75082 -12.53929 -12.18963 -11.96358 -11.91517 -11.73295 -11.60435 -10.98218 -10.87417 -10.31220 -9.80742 -9.66967 -9.40661 -9.37902 -8.90599 -8.70851 -7.80321 -6.15594 -4.22363 0.02638 0.50223 1.15837 2.87785 3.25902 3.30317 3.31730 3.39266 3.58822 3.73586 3.82996 3.88910 4.32913 4.35427 4.51585 4.91280 5.05799 5.20479 5.43098 5.55234 5.71455 6.56834 6.64201 7.04192 7.11396 7.47313 7.51897 7.55980 7.86224 8.01824 8.74026 8.89040 9.27742 9.45855 10.94573 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038093 B = 0.002923 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.872781 B = 9577.417372 C =10026.946786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.696 3.304 12 O -0.597 6.597 13 N -0.753 5.753 14 C 0.197 3.803 15 C 0.070 3.930 16 C 0.092 3.908 17 N -0.432 5.432 18 C 0.122 3.878 19 Cl -0.012 7.012 20 C 0.076 3.924 21 N -0.404 5.404 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.387 0.613 26 H 0.392 0.608 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.185 0.815 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.374 -20.266 0.031 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.476 6.476 13 N -0.412 5.412 14 C 0.071 3.929 15 C -0.071 4.071 16 C -0.069 4.069 17 N -0.148 5.148 18 C -0.046 4.046 19 Cl 0.016 6.984 20 C -0.085 4.085 21 N -0.119 5.119 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.219 0.781 26 H 0.225 0.775 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.202 0.798 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.157 -20.385 0.030 23.238 hybrid contribution 1.580 0.866 0.033 1.801 sum 12.736 -19.519 0.063 23.307 Atomic orbital electron populations 1.69963 1.06082 1.27416 1.48809 1.24937 0.94914 0.99381 0.94740 0.86472 0.79404 0.82331 0.78662 1.20094 1.21065 1.20093 1.21187 0.93234 0.90445 1.53310 0.92009 1.19003 0.87731 0.80949 0.97710 1.45721 1.10893 1.04276 1.76975 1.16059 0.85007 0.80941 0.78395 1.90888 1.14043 1.84095 1.58580 1.45025 1.09044 1.04115 1.82974 1.19777 0.90331 0.78299 1.04519 1.22547 0.97543 0.97463 0.89572 1.23777 0.91345 0.91817 0.99954 1.67884 1.07652 1.10820 1.28439 1.22968 0.93603 0.96162 0.91849 1.98438 1.40661 1.60824 1.98499 1.23706 0.93288 0.93449 0.98096 1.68503 1.05794 1.08607 1.29008 0.92377 0.95633 0.95618 0.78116 0.77515 0.89336 0.89266 0.79838 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16 10 N -0.73 -15.22 5.55 -66.41 -0.37 -15.59 16 11 C 0.70 13.81 8.57 -86.91 -0.74 13.07 16 12 O -0.60 -14.35 16.34 5.29 0.09 -14.26 16 13 N -0.75 -10.59 5.55 -66.41 -0.37 -10.96 16 14 C 0.20 2.31 6.00 -5.19 -0.03 2.28 16 15 C 0.07 0.69 6.15 -82.42 -0.51 0.18 16 16 C 0.09 0.81 10.86 -17.38 -0.19 0.62 16 17 N -0.43 -4.33 10.49 -10.17 -0.11 -4.44 16 18 C 0.12 1.10 7.29 -17.27 -0.13 0.97 16 19 Cl -0.01 -0.10 29.13 -51.86 -1.51 -1.61 16 20 C 0.08 0.64 11.01 -17.33 -0.19 0.45 16 21 N -0.40 -4.21 10.42 -9.26 -0.10 -4.30 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.39 6.93 8.33 -40.82 -0.34 6.59 16 26 H 0.39 4.64 8.48 -40.82 -0.35 4.29 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 29 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -33.18 292.99 -7.22 -40.40 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.75 Total: 4.59 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -2.23 Total: 11.28 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.20 Total: -60.56 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.18 -7.22 -40.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229927.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.423 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds