Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47141 * 239.99649 * 3 2 1 5 5 H 1.48501 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 119.99922 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00098 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99380 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00131 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99660 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00071 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47272 * 179.97438 * 14 13 11 16 16 C 1.38344 * 119.98028 * 94.71985 * 15 14 13 17 17 N 1.32144 * 120.01716 * 180.27311 * 16 15 14 18 18 C 1.32245 * 119.98439 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 120.01974 * 180.02562 * 18 17 16 20 20 C 1.38526 * 119.96318 * 359.97438 * 18 17 16 21 21 N 1.32106 * 119.98373 * 0.02562 * 20 18 17 22 22 H 0.97001 * 120.00459 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46716 * 60.00023 * 9 7 2 24 24 H 1.08997 * 109.46886 * 300.00088 * 9 7 2 25 25 H 0.96988 * 120.00235 * 0.02562 * 10 9 7 26 26 H 0.96996 * 119.99576 * 359.97438 * 13 11 10 27 27 H 1.09003 * 109.46718 * 59.99376 * 14 13 11 28 28 H 1.08999 * 109.46721 * 300.00029 * 14 13 11 29 29 H 1.08002 * 119.99617 * 0.25861 * 16 15 14 30 30 H 1.08002 * 120.00299 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7539 -4.8833 0.0019 12 8 0.5586 -5.1055 0.0029 13 7 2.6298 -5.9077 0.0022 14 6 2.1416 -7.2890 0.0032 15 6 3.3137 -8.2361 0.0027 16 6 3.7903 -8.7468 1.1968 17 7 4.8215 -9.5732 1.1977 18 6 5.3982 -9.9116 0.0567 19 17 6.7526 -10.9977 0.0567 20 6 4.9203 -9.3999 -1.1386 21 7 3.8894 -8.5738 -1.1378 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8919 25 1 3.1568 -3.4353 0.0010 26 1 3.5834 -5.7304 0.0017 27 1 1.5356 -7.4607 -0.8865 28 1 1.5363 -7.4597 0.8935 29 1 3.3198 -8.4699 2.1286 30 1 5.3911 -9.6755 -2.0707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922229927.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = -16.667010 kcal Electronic energy + Delta-G solvation = -17048.157941 eV Core-core repulsion = 13903.496768 eV Total energy + Delta-G solvation = -3144.661173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.41762 -40.80551 -38.01388 -36.60822 -35.95780 -35.30205 -34.34260 -32.70020 -29.51078 -27.77022 -26.00461 -24.77408 -23.68174 -21.90665 -19.94620 -19.16206 -18.53873 -18.18064 -17.59559 -16.75463 -16.59268 -16.49435 -16.11426 -15.43075 -14.94511 -14.87647 -14.53736 -14.01159 -13.73870 -13.55772 -13.27063 -12.92015 -12.89730 -12.66360 -12.54014 -12.31637 -12.21665 -11.47547 -11.33004 -10.77371 -10.42998 -10.33144 -10.28384 -9.60357 -8.26135 -6.42245 -0.69720 -0.20208 0.49451 1.45041 1.49126 1.57012 1.79640 2.24452 2.37272 2.46145 2.77177 3.05113 3.08891 3.18924 3.55334 3.57727 3.80508 4.34504 4.52813 4.60785 4.95766 5.10501 5.31211 5.38881 5.50487 5.67482 5.86718 5.87790 6.20464 6.40463 6.69144 7.25161 7.29030 7.70753 8.85857 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038093 B = 0.002923 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.872781 B = 9577.417372 C =10026.946786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.697 3.303 12 O -0.642 6.642 13 N -0.728 5.728 14 C 0.198 3.802 15 C 0.066 3.934 16 C 0.099 3.901 17 N -0.449 5.449 18 C 0.120 3.880 19 Cl -0.001 7.001 20 C 0.080 3.920 21 N -0.424 5.424 22 H 0.269 0.731 23 H -0.013 1.013 24 H -0.011 1.011 25 H 0.404 0.596 26 H 0.407 0.593 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.207 0.793 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.824 -20.543 0.145 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.397 3.603 12 O -0.524 6.524 13 N -0.386 5.386 14 C 0.073 3.927 15 C -0.075 4.075 16 C -0.061 4.061 17 N -0.166 5.166 18 C -0.048 4.048 19 Cl 0.027 6.973 20 C -0.082 4.082 21 N -0.139 5.139 22 H 0.078 0.922 23 H 0.005 0.995 24 H 0.007 0.993 25 H 0.239 0.761 26 H 0.243 0.757 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.224 0.776 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 13.686 -20.721 0.147 24.833 hybrid contribution 0.856 0.790 -0.021 1.166 sum 14.542 -19.930 0.125 24.672 Atomic orbital electron populations 1.70126 1.08198 1.28612 1.49915 1.26030 0.95762 1.03756 0.93929 0.85224 0.77913 0.76739 0.79425 1.18802 1.21120 1.18683 1.21578 0.94284 0.90578 1.52947 0.89944 1.18421 0.88050 0.83142 0.94178 1.45300 1.10932 1.03817 1.77552 1.16151 0.84920 0.81373 0.77875 1.90859 1.16373 1.84791 1.60395 1.44746 1.09027 1.03917 1.80944 1.19839 0.91309 0.77018 1.04560 1.22193 0.97331 0.97803 0.90132 1.24040 0.90783 0.90953 1.00335 1.67947 1.08221 1.11407 1.29038 1.23178 0.93665 0.95980 0.91928 1.98444 1.40004 1.60352 1.98477 1.24090 0.92514 0.92536 0.99013 1.68456 1.06590 1.09446 1.29440 0.92236 0.99539 0.99257 0.76090 0.75744 0.90646 0.88037 0.77642 0.77457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.27 5.46 84.66 0.46 0.74 16 3 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.56 -30.04 9.28 25.60 0.24 -29.80 16 8 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.29 15.59 5.43 85.63 0.46 16.06 16 10 N -0.72 -30.38 5.55 -482.29 -2.68 -33.06 16 11 C 0.70 27.77 8.57 179.05 1.53 29.31 16 12 O -0.64 -31.69 16.34 -3.97 -0.06 -31.76 16 13 N -0.73 -19.72 5.55 -482.29 -2.68 -22.40 16 14 C 0.20 4.45 6.00 85.63 0.51 4.96 16 15 C 0.07 1.20 6.15 42.54 0.26 1.46 16 16 C 0.10 1.55 10.86 84.67 0.92 2.47 16 17 N -0.45 -8.12 10.49 -186.09 -1.95 -10.08 16 18 C 0.12 1.92 7.29 84.70 0.62 2.54 16 19 Cl 0.00 -0.02 29.13 -2.72 -0.08 -0.09 16 20 C 0.08 1.17 11.01 84.72 0.93 2.11 16 21 N -0.42 -8.10 10.42 -183.20 -1.91 -10.01 16 22 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 23 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H 0.40 14.02 8.33 -92.72 -0.77 13.24 16 26 H 0.41 8.84 8.48 -92.71 -0.79 8.06 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.10 2.07 8.05 -2.39 -0.02 2.06 16 29 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -72.97 292.99 -1.46 -74.43 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.35 Total: 14.60 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: 5.94 Total: 29.84 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -8.93 Total: -131.07 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.06 Total: -31.76 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.09 kcal Total: -72.97 -1.46 -74.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229927.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.766 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds