Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46940 * 2 1 4 4 S 1.81392 * 109.47189 * 119.99983 * 2 1 3 5 5 C 1.76207 * 103.00142 * 292.60311 * 4 2 1 6 6 C 1.38944 * 120.05021 * 95.46901 * 5 4 2 7 7 C 1.38097 * 119.93840 * 180.23936 * 6 5 4 8 8 C 1.38479 * 120.05657 * 359.50587 * 7 6 5 9 9 F 1.35100 * 119.94492 * 180.27890 * 8 7 6 10 10 C 1.38476 * 120.11158 * 0.26447 * 8 7 6 11 11 C 1.38102 * 120.05495 * 359.96824 * 10 8 7 12 12 C 1.50695 * 109.47356 * 240.00535 * 2 1 3 13 13 O 1.21220 * 119.99734 * 264.99798 * 12 2 1 14 14 O 1.34314 * 120.00770 * 84.99372 * 12 2 1 15 15 C 1.34915 * 117.00412 * 180.02562 * 14 12 2 16 16 H 1.08003 * 119.99886 * 359.97438 * 15 14 12 17 17 C 1.38754 * 120.00230 * 180.02562 * 15 14 12 18 18 N 1.31443 * 120.00198 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99861 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46860 * 90.00212 * 19 17 15 21 21 H 1.48494 * 109.47674 * 210.00395 * 19 17 15 22 22 H 1.48501 * 109.47410 * 330.00708 * 19 17 15 23 23 H 1.09003 * 109.47100 * 65.91795 * 1 2 3 24 24 H 1.09001 * 109.47184 * 185.91921 * 1 2 3 25 25 H 1.08994 * 109.47391 * 305.92016 * 1 2 3 26 26 H 1.07995 * 120.02924 * 0.02562 * 6 5 4 27 27 H 1.07999 * 119.97131 * 179.79287 * 7 6 5 28 28 H 1.07996 * 119.97551 * 180.02562 * 10 8 7 29 29 H 1.08000 * 120.02822 * 180.02562 * 11 10 8 30 30 H 0.97003 * 119.99691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 1.6446 0.2207 2.7877 6 6 0.4557 -0.0088 3.4691 7 6 0.0715 0.8387 4.4895 8 6 0.8750 1.9105 4.8406 9 9 0.4997 2.7348 5.8430 10 6 2.0627 2.1385 4.1662 11 6 2.4491 1.2967 3.1418 12 6 2.0323 -0.7103 -1.2305 13 8 2.3207 -1.8864 -1.1761 14 8 2.1606 -0.0403 -2.3875 15 6 2.6150 -0.7354 -3.4507 16 1 2.8577 -1.7827 -3.3475 17 6 2.7717 -0.1045 -4.6766 18 7 3.2150 -0.7816 -5.7123 19 14 2.3528 1.7071 -4.8549 20 1 3.5569 2.5249 -4.5603 21 1 1.8993 1.9761 -6.2431 22 1 1.2693 2.0607 -3.9030 23 1 -0.3633 0.4193 -0.9382 24 1 -0.3633 -1.0222 0.1060 25 1 -0.3634 0.6028 0.8322 26 1 -0.1691 -0.8472 3.1987 27 1 -0.8542 0.6627 5.0173 28 1 2.6879 2.9748 4.4421 29 1 3.3757 1.4748 2.6164 30 1 3.3242 -0.3406 -6.5694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924250439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -96.946922 kcal Electronic energy + Delta-G solvation = -17402.550823 eV Core-core repulsion = 14204.239446 eV Total energy + Delta-G solvation = -3198.311377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.24256 -39.31025 -39.04195 -35.55464 -32.99387 -32.28875 -31.50320 -30.64493 -26.01986 -24.07507 -23.28642 -23.01812 -20.16738 -18.26088 -18.06711 -17.48622 -16.74900 -16.53508 -15.92649 -15.35615 -14.99399 -14.83300 -14.52329 -13.90043 -13.87505 -13.62122 -13.27418 -13.01919 -12.54868 -12.47931 -12.26838 -11.71680 -11.49711 -11.40272 -11.22950 -10.55515 -10.43717 -10.18491 -9.77003 -9.45101 -9.26606 -8.85430 -8.73983 -7.66399 -6.42586 -4.18873 0.48900 0.91617 1.59426 2.53313 3.06636 3.20179 3.26396 3.31292 3.34406 3.89882 3.97053 4.19290 4.40573 4.55707 4.94408 4.95998 5.00803 5.16004 5.19536 5.39763 5.57422 5.60230 5.76026 5.82111 5.83653 6.00339 6.17247 6.21241 6.47395 7.64104 7.97408 8.51853 8.94432 9.57977 10.65549 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.004252 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.104020 B = 6583.408141 C = 6997.053892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 H 0.109 0.891 4 S -0.073 6.073 5 C -0.141 4.141 6 C -0.039 4.039 7 C -0.165 4.165 8 C 0.118 3.882 9 F -0.138 7.138 10 C -0.163 4.163 11 C -0.043 4.043 12 C 0.427 3.573 13 O -0.520 6.520 14 O -0.244 6.244 15 C -0.382 4.382 16 H 0.111 0.889 17 C 0.068 3.932 18 N -0.871 5.871 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.260 1.260 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 7.291 18.793 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.197 4.197 3 H 0.128 0.872 4 S 0.160 5.840 5 C -0.252 4.252 6 C -0.059 4.059 7 C -0.185 4.185 8 C 0.099 3.901 9 F -0.117 7.117 10 C -0.184 4.184 11 C -0.064 4.064 12 C 0.271 3.729 13 O -0.414 6.414 14 O -0.152 6.152 15 C -0.458 4.458 16 H 0.129 0.871 17 C -0.136 4.136 18 N -0.510 5.510 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.184 1.184 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.162 0.838 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.293 6.011 18.610 20.260 hybrid contribution -0.791 2.169 -0.091 2.310 sum -6.084 8.179 18.519 21.139 Atomic orbital electron populations 1.22002 0.90904 1.03792 1.03207 1.22957 1.00603 1.02937 0.93182 0.87247 1.86207 1.75549 1.28077 0.94176 1.22136 0.98627 1.01263 1.03179 1.21547 0.94232 0.97461 0.92686 1.21211 1.01272 0.95604 1.00418 1.17868 0.94783 0.90057 0.87416 1.91514 1.91291 1.70772 1.58104 1.21212 0.96591 1.02302 0.98280 1.21611 0.98729 0.91641 0.94379 1.21779 0.80574 0.86155 0.84429 1.90645 1.49158 1.16696 1.84930 1.83492 1.71341 1.42764 1.17629 1.20678 1.43196 0.97000 0.84929 0.87097 1.24529 0.95562 0.99876 0.93635 1.69603 1.43109 1.37226 1.01029 0.86243 0.79772 0.83325 0.77775 1.19754 1.20616 1.18432 0.90571 0.90594 0.91701 0.83826 0.84254 0.84253 0.83889 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.04 37.16 0.34 -1.65 16 2 C -0.07 -1.16 3.24 -27.89 -0.09 -1.25 16 3 H 0.11 1.68 8.14 -51.92 -0.42 1.26 16 4 S -0.07 -1.14 20.39 -107.50 -2.19 -3.34 16 5 C -0.14 -1.68 5.31 -39.06 -0.21 -1.89 16 6 C -0.04 -0.39 9.48 -39.37 -0.37 -0.76 16 7 C -0.16 -1.50 10.02 -39.54 -0.40 -1.90 16 8 C 0.12 1.17 7.30 -39.40 -0.29 0.88 16 9 F -0.14 -1.43 17.26 2.25 0.04 -1.39 16 10 C -0.16 -1.55 10.02 -39.54 -0.40 -1.94 16 11 C -0.04 -0.46 9.79 -39.37 -0.39 -0.84 16 12 C 0.43 9.95 7.03 36.00 0.25 10.20 16 13 O -0.52 -13.75 15.38 -19.06 -0.29 -14.04 16 14 O -0.24 -6.34 8.58 -20.69 -0.18 -6.52 16 15 C -0.38 -11.25 10.10 30.92 0.31 -10.94 16 16 H 0.11 3.60 7.09 -52.48 -0.37 3.23 16 17 C 0.07 1.93 5.49 -17.53 -0.10 1.83 16 18 N -0.87 -25.50 13.96 55.48 0.77 -24.72 16 19 Si 0.90 21.00 28.62 -169.99 -4.86 16.14 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.74 7.59 -51.93 -0.39 0.35 16 26 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -32.06 291.96 -6.51 -38.57 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -2.86 Total: -0.85 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.33 Total: -8.25 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.77 Total: -24.72 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.47 Total: -20.56 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.14 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.19 Total: -3.34 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.06 -6.51 -38.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924250439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.377 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds