Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46940 * 2 1 4 4 S 1.81392 * 109.47189 * 119.99983 * 2 1 3 5 5 C 1.76207 * 103.00142 * 292.60311 * 4 2 1 6 6 C 1.38944 * 120.05021 * 95.46901 * 5 4 2 7 7 C 1.38097 * 119.93840 * 180.23936 * 6 5 4 8 8 C 1.38479 * 120.05657 * 359.50587 * 7 6 5 9 9 F 1.35100 * 119.94492 * 180.27890 * 8 7 6 10 10 C 1.38476 * 120.11158 * 0.26447 * 8 7 6 11 11 C 1.38102 * 120.05495 * 359.96824 * 10 8 7 12 12 C 1.50695 * 109.47356 * 240.00535 * 2 1 3 13 13 O 1.21220 * 119.99734 * 264.99798 * 12 2 1 14 14 O 1.34314 * 120.00770 * 84.99372 * 12 2 1 15 15 C 1.34915 * 117.00412 * 180.02562 * 14 12 2 16 16 H 1.08003 * 119.99886 * 359.97438 * 15 14 12 17 17 C 1.38754 * 120.00230 * 180.02562 * 15 14 12 18 18 N 1.31443 * 120.00198 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99861 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46860 * 90.00212 * 19 17 15 21 21 H 1.48494 * 109.47674 * 210.00395 * 19 17 15 22 22 H 1.48501 * 109.47410 * 330.00708 * 19 17 15 23 23 H 1.09003 * 109.47100 * 65.91795 * 1 2 3 24 24 H 1.09001 * 109.47184 * 185.91921 * 1 2 3 25 25 H 1.08994 * 109.47391 * 305.92016 * 1 2 3 26 26 H 1.07995 * 120.02924 * 0.02562 * 6 5 4 27 27 H 1.07999 * 119.97131 * 179.79287 * 7 6 5 28 28 H 1.07996 * 119.97551 * 180.02562 * 10 8 7 29 29 H 1.08000 * 120.02822 * 180.02562 * 11 10 8 30 30 H 0.97003 * 119.99691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 1.6446 0.2207 2.7877 6 6 0.4557 -0.0088 3.4691 7 6 0.0715 0.8387 4.4895 8 6 0.8750 1.9105 4.8406 9 9 0.4997 2.7348 5.8430 10 6 2.0627 2.1385 4.1662 11 6 2.4491 1.2967 3.1418 12 6 2.0323 -0.7103 -1.2305 13 8 2.3207 -1.8864 -1.1761 14 8 2.1606 -0.0403 -2.3875 15 6 2.6150 -0.7354 -3.4507 16 1 2.8577 -1.7827 -3.3475 17 6 2.7717 -0.1045 -4.6766 18 7 3.2150 -0.7816 -5.7123 19 14 2.3528 1.7071 -4.8549 20 1 3.5569 2.5249 -4.5603 21 1 1.8993 1.9761 -6.2431 22 1 1.2693 2.0607 -3.9030 23 1 -0.3633 0.4193 -0.9382 24 1 -0.3633 -1.0222 0.1060 25 1 -0.3634 0.6028 0.8322 26 1 -0.1691 -0.8472 3.1987 27 1 -0.8542 0.6627 5.0173 28 1 2.6879 2.9748 4.4421 29 1 3.3757 1.4748 2.6164 30 1 3.3242 -0.3406 -6.5694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924250439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -115.220453 kcal Electronic energy + Delta-G solvation = -17403.343223 eV Core-core repulsion = 14204.239446 eV Total energy + Delta-G solvation = -3199.103777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.00944 -41.27497 -39.82070 -37.56665 -34.66269 -34.18946 -32.24892 -31.45961 -28.00395 -25.61125 -24.06143 -23.84019 -21.95013 -20.22903 -19.23450 -18.72172 -18.18830 -17.34874 -17.03284 -16.70896 -16.68128 -16.36553 -15.69387 -15.35282 -14.64780 -14.59738 -14.47895 -14.33376 -14.27317 -13.95312 -13.46596 -13.16365 -13.01286 -12.60051 -12.42617 -12.28925 -12.12467 -11.88500 -11.30048 -11.14822 -10.86593 -10.17915 -9.74925 -8.88546 -8.57550 -6.45636 -0.42183 0.18297 0.47552 1.21454 1.33357 1.42411 1.53129 1.55529 2.23096 2.29851 2.48113 2.88025 3.15221 3.69261 3.77123 3.88326 3.90929 4.19445 4.21583 4.25439 4.60734 4.65730 4.68935 4.88786 5.02471 5.05569 5.07100 5.23979 5.42778 5.73228 5.84010 6.44194 6.77325 7.48504 8.55197 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.004252 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.104020 B = 6583.408141 C = 6997.053892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 H 0.130 0.870 4 S -0.110 6.110 5 C -0.147 4.147 6 C -0.038 4.038 7 C -0.157 4.157 8 C 0.115 3.885 9 F -0.140 7.140 10 C -0.159 4.159 11 C -0.047 4.047 12 C 0.428 3.572 13 O -0.558 6.558 14 O -0.248 6.248 15 C -0.411 4.411 16 H 0.058 0.942 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.248 1.248 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.156 0.844 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 10.152 20.660 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.189 4.189 3 H 0.148 0.852 4 S 0.124 5.876 5 C -0.259 4.259 6 C -0.058 4.058 7 C -0.177 4.177 8 C 0.095 3.905 9 F -0.118 7.118 10 C -0.180 4.180 11 C -0.068 4.068 12 C 0.273 3.727 13 O -0.453 6.453 14 O -0.157 6.157 15 C -0.487 4.487 16 H 0.076 0.924 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.801 3.199 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.171 1.171 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.174 0.826 27 H 0.182 0.818 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.673 8.847 20.481 23.287 hybrid contribution -0.348 1.181 -0.476 1.320 sum -7.021 10.028 20.005 23.453 Atomic orbital electron populations 1.22018 0.88406 1.04338 1.04540 1.23028 1.02401 1.02990 0.90526 0.85175 1.86387 1.76190 1.29820 0.95208 1.21948 1.00100 1.01529 1.02281 1.21666 0.93640 0.97914 0.92602 1.21423 1.01903 0.94673 0.99751 1.18062 0.95007 0.90155 0.87260 1.91518 1.91301 1.70852 1.58171 1.21385 0.96674 1.02442 0.97466 1.21689 0.98861 0.91399 0.94832 1.23185 0.78201 0.86136 0.85189 1.90625 1.50226 1.18811 1.85596 1.83500 1.72064 1.42390 1.17787 1.20333 1.45833 0.95427 0.87078 0.92405 1.25570 0.94476 1.05641 0.92456 1.69701 1.43767 1.39900 1.01959 0.85100 0.80249 0.75802 0.78737 1.18331 1.18860 1.17116 0.90906 0.91011 0.88098 0.82646 0.81839 0.82242 0.83357 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.04 71.98 0.65 -2.89 16 2 C -0.06 -2.02 3.24 29.85 0.10 -1.92 16 3 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 4 S -0.11 -3.34 20.39 -56.49 -1.15 -4.49 16 5 C -0.15 -3.17 5.31 22.61 0.12 -3.05 16 6 C -0.04 -0.65 9.48 22.41 0.21 -0.44 16 7 C -0.16 -2.30 10.02 22.29 0.22 -2.07 16 8 C 0.11 1.88 7.30 22.38 0.16 2.04 16 9 F -0.14 -2.43 17.26 44.97 0.78 -1.66 16 10 C -0.16 -2.51 10.02 22.29 0.22 -2.28 16 11 C -0.05 -0.88 9.79 22.40 0.22 -0.66 16 12 C 0.43 20.36 7.03 71.23 0.50 20.86 16 13 O -0.56 -30.88 15.38 20.74 0.32 -30.56 16 14 O -0.25 -13.16 8.58 14.90 0.13 -13.03 16 15 C -0.41 -25.26 10.10 67.94 0.69 -24.57 16 16 H 0.06 4.06 7.09 -2.91 -0.02 4.04 16 17 C 0.02 1.10 5.49 84.87 0.47 1.57 16 18 N -0.91 -54.95 13.96 21.62 0.30 -54.65 16 19 Si 0.98 42.69 28.62 68.60 1.96 44.66 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 22 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.10 1.95 7.59 -2.39 -0.02 1.93 16 26 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.29 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -72.99 291.96 7.06 -65.93 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.16 Total: 7.21 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 3.56 Total: -13.41 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.30 Total: -54.65 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: 0.45 Total: -43.59 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.96 Total: 44.66 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.15 Total: -4.49 kcal Total: -72.99 7.06 -65.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924250439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.289 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds