Wall clock time and date at job start Mon Mar 30 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48495 * 109.46866 * 269.99783 * 3 2 1 5 5 H 1.48499 * 109.47020 * 29.99899 * 3 2 1 6 6 H 1.48494 * 109.46876 * 150.00281 * 3 2 1 7 7 C 1.38946 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00294 * 197.79033 * 7 2 1 9 9 N 1.37100 * 120.00283 * 18.06526 * 7 2 1 10 10 C 1.34783 * 119.99518 * 45.89399 * 9 7 2 11 11 O 1.21292 * 119.99922 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99591 * 180.02562 * 10 9 7 13 13 H 1.08998 * 108.87389 * 39.99840 * 12 10 9 14 14 C 1.52822 * 108.88856 * 281.40795 * 12 10 9 15 15 S 1.82022 * 108.23498 * 187.34701 * 14 12 10 16 16 C 1.81852 * 101.17868 * 61.52058 * 15 14 12 17 17 C 1.50142 * 109.06231 * 315.88412 * 16 15 14 18 18 O 1.21290 * 116.82473 * 200.59630 * 17 16 15 19 19 N 1.31763 * 126.34864 * 20.57875 * 17 16 15 20 20 C 1.46500 * 120.00543 * 225.89280 * 9 7 2 21 21 C 1.53002 * 117.49431 * 3.13278 * 20 9 7 22 22 C 1.53000 * 60.00425 * 252.51338 * 21 20 9 23 23 H 0.97003 * 120.00478 * 4.92839 * 1 2 3 24 24 H 1.08999 * 109.71471 * 307.10451 * 14 12 10 25 25 H 1.08998 * 109.71796 * 67.74793 * 14 12 10 26 26 H 1.09008 * 109.53552 * 196.01158 * 16 15 14 27 27 H 1.08994 * 109.61014 * 75.80435 * 16 15 14 28 28 H 0.96991 * 115.08811 * 173.50740 * 19 17 16 29 29 H 1.08994 * 115.54926 * 148.84526 * 20 9 7 30 30 H 1.08996 * 117.50101 * 0.02562 * 21 20 9 31 31 H 1.09006 * 117.49317 * 145.02294 * 21 20 9 32 32 H 1.08994 * 117.50168 * 252.51339 * 22 21 20 33 33 H 1.09001 * 117.49463 * 107.48714 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0502 -1.2256 0.2863 9 7 1.3741 -2.3616 -0.3671 10 6 0.6010 -2.3851 -1.4709 11 8 0.4665 -1.3815 -2.1386 12 6 -0.0972 -3.6581 -1.8747 13 1 -0.4745 -4.1525 -0.9796 14 6 0.9111 -4.5790 -2.5609 15 16 0.0094 -6.0096 -3.2343 16 6 -1.1096 -5.1971 -4.4152 17 6 -1.7011 -3.9770 -3.7704 18 8 -2.7283 -3.5473 -4.2514 19 7 -1.2133 -3.3279 -2.7327 20 6 1.5362 -3.5736 0.4396 21 6 2.3665 -3.4641 1.7200 22 6 2.9312 -4.1990 0.5027 23 1 -0.4851 0.8369 -0.0722 24 1 1.4081 -4.0428 -3.3692 25 1 1.6502 -4.9201 -1.8360 26 1 -1.9076 -5.8853 -4.6940 27 1 -0.5525 -4.9051 -5.3054 28 1 -1.6729 -2.5033 -2.5103 29 1 0.6809 -4.2491 0.4502 30 1 2.7918 -2.4902 1.9624 31 1 2.0574 -4.0677 2.5735 32 1 2.9936 -5.2859 0.5552 33 1 3.7283 -3.7085 -0.0561 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:47 Heat of formation + Delta-G solvation = -19.677946 kcal Electronic energy + Delta-G solvation = -19329.708515 eV Core-core repulsion = 16290.500828 eV Total energy + Delta-G solvation = -3039.207687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11157 -38.78352 -36.52726 -35.08314 -32.96456 -31.39697 -30.16622 -29.92454 -25.76398 -24.05919 -21.93183 -21.45222 -20.36115 -19.32220 -17.71780 -16.76036 -16.42405 -16.30247 -15.84433 -15.20229 -14.84518 -14.40345 -14.28400 -13.80641 -13.59293 -13.25837 -12.83133 -12.74562 -12.27028 -11.87416 -11.63315 -11.30192 -11.05123 -10.96861 -10.86647 -10.61664 -10.31885 -10.14666 -9.94549 -9.73074 -9.18014 -8.80355 -8.24605 -7.81314 -7.29684 -6.29308 -4.11769 1.46332 2.16291 2.78069 3.20757 3.28659 3.32192 3.34094 3.73534 4.08847 4.39676 4.49850 4.62720 4.88017 4.98790 5.04640 5.09455 5.33644 5.34980 5.39850 5.52937 5.65056 5.72313 5.94728 6.06856 6.27724 6.55044 6.78686 6.90520 7.44478 7.60939 8.05269 8.27658 8.80747 8.86213 9.39316 9.94316 10.77573 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.007408 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.453756 B = 3778.693667 C = 4759.414759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.348 4.348 8 H 0.082 0.918 9 N -0.414 5.414 10 C 0.473 3.527 11 O -0.522 6.522 12 C 0.126 3.874 13 H 0.095 0.905 14 C -0.083 4.083 15 S -0.243 6.243 16 C -0.100 4.100 17 C 0.522 3.478 18 O -0.559 6.559 19 N -0.683 5.683 20 C 0.062 3.938 21 C -0.168 4.168 22 C -0.207 4.207 23 H 0.268 0.732 24 H 0.098 0.902 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.119 0.881 28 H 0.412 0.588 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -10.916 -1.166 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.474 4.474 8 H 0.100 0.900 9 N -0.134 5.134 10 C 0.257 3.743 11 O -0.399 6.399 12 C 0.015 3.985 13 H 0.113 0.887 14 C -0.232 4.232 15 S -0.016 6.016 16 C -0.251 4.251 17 C 0.307 3.693 18 O -0.440 6.440 19 N -0.333 5.333 20 C -0.044 4.044 21 C -0.205 4.205 22 C -0.246 4.246 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.150 0.850 26 H 0.155 0.845 27 H 0.137 0.863 28 H 0.249 0.751 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.249 -11.408 -1.521 11.727 hybrid contribution 0.202 2.244 -0.067 2.254 sum 2.451 -9.164 -1.587 9.618 Atomic orbital electron populations 1.69835 1.06547 1.28236 1.41840 1.25253 0.94850 0.99577 0.93925 0.86225 0.79393 0.82195 0.78446 1.20243 1.21159 1.19681 1.18907 0.94235 0.83909 1.50382 0.90048 1.42683 1.44279 1.07594 1.18850 1.19703 0.84294 0.88010 0.82253 1.90591 1.62052 1.34364 1.52853 1.20900 0.87274 0.96962 0.93396 0.88734 1.23708 0.99615 0.95528 1.04386 1.87031 1.47108 1.15794 1.51677 1.23563 1.02240 0.98379 1.00882 1.19160 0.84964 0.84965 0.80255 1.90791 1.24054 1.67361 1.61755 1.44674 1.31419 1.27699 1.29507 1.21884 0.93105 0.91724 0.97674 1.23069 1.03856 1.02542 0.91076 1.23372 0.99016 0.98631 1.03596 0.92226 0.88349 0.85007 0.84477 0.86270 0.75091 0.87686 0.87297 0.89538 0.89461 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.16 11.89 55.50 0.66 -22.50 16 2 C 0.08 1.98 4.39 -17.47 -0.08 1.91 16 3 Si 0.91 20.83 29.59 -169.99 -5.03 15.80 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.35 -8.71 7.84 -14.93 -0.12 -8.83 16 8 H 0.08 1.97 7.35 -52.48 -0.39 1.59 16 9 N -0.41 -9.19 2.82 -107.72 -0.30 -9.50 16 10 C 0.47 10.67 6.04 -10.98 -0.07 10.60 16 11 O -0.52 -14.06 14.14 5.55 0.08 -13.98 16 12 C 0.13 2.20 2.67 -70.19 -0.19 2.01 16 13 H 0.10 1.55 6.44 -51.93 -0.33 1.21 16 14 C -0.08 -1.20 5.77 37.07 0.21 -0.99 16 15 S -0.24 -3.13 22.40 -107.50 -2.41 -5.54 16 16 C -0.10 -1.30 6.61 35.74 0.24 -1.07 16 17 C 0.52 9.06 7.65 -12.58 -0.10 8.97 16 18 O -0.56 -11.49 17.60 5.55 0.10 -11.40 16 19 N -0.68 -12.54 4.63 -57.16 -0.26 -12.81 16 20 C 0.06 1.08 4.97 -67.92 -0.34 0.74 16 21 C -0.17 -2.68 9.81 -26.73 -0.26 -2.94 16 22 C -0.21 -3.01 9.90 -26.73 -0.26 -3.27 16 23 H 0.27 7.26 8.32 -40.82 -0.34 6.92 16 24 H 0.10 1.48 8.13 -51.93 -0.42 1.05 16 25 H 0.13 1.72 6.78 -51.93 -0.35 1.37 16 26 H 0.14 1.55 8.14 -51.92 -0.42 1.12 16 27 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.41 8.52 7.88 -40.82 -0.32 8.19 16 29 H 0.11 1.62 6.42 -51.93 -0.33 1.29 16 30 H 0.11 1.96 6.76 -51.93 -0.35 1.61 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -31.00 288.82 -7.53 -38.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -3.75 Total: 9.92 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.96 Total: 7.13 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.09 Total: -44.81 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.18 Total: -25.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.41 Total: -5.54 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.00 -7.53 -38.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.848 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds