Wall clock time and date at job start Mon Mar 30 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35505 * 117.00300 * 2 1 4 4 C 1.39161 * 119.49768 * 180.02562 * 3 2 1 5 5 C 1.36946 * 119.43532 * 180.02562 * 4 3 2 6 6 C 1.40310 * 118.48344 * 0.02562 * 5 4 3 7 7 C 1.47435 * 120.51213 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99979 * 231.00674 * 7 6 5 9 9 N 1.34778 * 119.99620 * 51.01139 * 7 6 5 10 10 C 1.46499 * 120.00301 * 5.97520 * 9 7 6 11 11 C 1.36913 * 119.99697 * 185.97665 * 9 7 6 12 12 H 1.08004 * 119.99966 * 8.08010 * 11 9 7 13 13 C 1.39013 * 120.00251 * 187.81241 * 11 9 7 14 14 N 1.31393 * 119.99644 * 352.32034 * 13 11 9 15 15 Si 1.86798 * 120.00432 * 172.32489 * 13 11 9 16 16 H 1.48501 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47402 * 119.99788 * 15 13 11 18 18 H 1.48506 * 109.47054 * 239.99875 * 15 13 11 19 19 C 1.39804 * 118.98242 * 0.25149 * 6 5 4 20 20 Cl 1.73593 * 119.77818 * 179.72731 * 19 6 5 21 21 N 1.31833 * 120.44024 * 359.47625 * 19 6 5 22 22 H 1.09002 * 109.47459 * 59.99486 * 1 2 3 23 23 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47028 * 299.99616 * 1 2 3 25 25 H 1.07991 * 120.28447 * 0.04543 * 4 3 2 26 26 H 1.07996 * 120.76032 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47126 * 243.47030 * 10 9 7 28 28 H 1.09002 * 109.46778 * 3.46750 * 10 9 7 29 29 H 1.09001 * 109.47194 * 123.46804 * 10 9 7 30 30 H 0.96996 * 119.99863 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2679 -0.0005 5 6 4.0549 2.4887 0.0000 6 6 3.2587 3.6440 0.0016 7 6 3.8797 4.9812 0.0028 8 8 3.5351 5.8110 0.8225 9 7 4.8292 5.2840 -0.9045 10 6 5.1516 4.3341 -1.9723 11 6 5.4925 6.4793 -0.8284 12 1 5.3509 7.1218 0.0282 13 6 6.3524 6.8634 -1.8508 14 7 6.6462 6.0194 -2.8140 15 14 7.0905 8.5794 -1.8553 16 1 6.6048 9.3303 -0.6697 17 1 8.5715 8.4815 -1.8072 18 1 6.6813 9.2910 -3.0929 19 6 1.8673 3.5078 0.0080 20 17 0.8625 4.9233 0.0173 21 7 1.3133 2.3115 0.0020 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0191 0.3600 -0.0017 26 1 5.1325 2.5607 0.0000 27 1 6.1839 4.0016 -1.8633 28 1 4.4843 3.4747 -1.9076 29 1 5.0264 4.8194 -2.9403 30 1 7.2465 6.2873 -3.5272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931241783.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:34 Heat of formation + Delta-G solvation = -16.762866 kcal Electronic energy + Delta-G solvation = -18377.226531 eV Core-core repulsion = 15200.268451 eV Total energy + Delta-G solvation = -3176.958081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62987 -38.72229 -37.37341 -36.13999 -34.76502 -32.69824 -31.55618 -30.39699 -27.38185 -26.47155 -24.84653 -23.32242 -23.03811 -19.75231 -18.43581 -17.35179 -17.00661 -16.35046 -16.02350 -15.00414 -14.91478 -14.46014 -14.26424 -13.83394 -13.61056 -13.30824 -13.14932 -12.26307 -11.98068 -11.80102 -11.75291 -11.58523 -11.12482 -11.00719 -10.76783 -10.59099 -10.38220 -10.30179 -9.77595 -9.60244 -9.11664 -8.55658 -8.16731 -7.96943 -6.37220 -3.88420 1.03959 1.27903 2.10687 3.08157 3.08984 3.20574 3.28021 3.55276 3.96034 4.07709 4.55267 4.70386 5.00933 5.10544 5.24314 5.26014 5.26831 5.32004 5.54264 5.61178 5.98526 6.22490 6.27147 6.39317 6.96295 7.14467 7.32435 7.47217 7.70196 7.95889 8.37947 9.07585 9.30504 9.86957 10.55720 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.031212 B = 0.005613 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.872981 B = 4987.621305 C = 5570.653047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.306 6.306 3 C 0.331 3.669 4 C -0.189 4.189 5 C -0.010 4.010 6 C -0.154 4.154 7 C 0.472 3.528 8 O -0.575 6.575 9 N -0.430 5.430 10 C 0.104 3.896 11 C -0.293 4.293 12 H 0.109 0.891 13 C 0.028 3.972 14 N -0.879 5.879 15 Si 0.932 3.068 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.237 3.763 20 Cl -0.008 7.008 21 N -0.540 5.540 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.148 0.852 26 H 0.154 0.846 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 -10.537 1.142 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.212 6.212 3 C 0.151 3.849 4 C -0.209 4.209 5 C -0.036 4.036 6 C -0.161 4.161 7 C 0.260 3.740 8 O -0.461 6.461 9 N -0.146 5.146 10 C -0.039 4.039 11 C -0.420 4.420 12 H 0.126 0.874 13 C -0.175 4.175 14 N -0.519 5.519 15 Si 0.759 3.241 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.073 3.927 20 Cl 0.021 6.979 21 N -0.266 5.266 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.166 0.834 26 H 0.172 0.828 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.131 -10.308 1.339 12.606 hybrid contribution 0.903 0.869 -0.279 1.284 sum -6.228 -9.439 1.060 11.359 Atomic orbital electron populations 1.22859 0.77270 1.02742 1.02730 1.86193 1.22921 1.24220 1.87893 1.19649 0.89116 0.83637 0.92498 1.20746 0.91573 0.99726 1.08875 1.21391 1.01085 0.89787 0.91369 1.20849 0.92291 0.97247 1.05694 1.17237 0.84164 0.86310 0.86339 1.90658 1.64830 1.49026 1.41564 1.43651 1.30488 1.16682 1.23807 1.22062 0.98795 0.90259 0.92770 1.19912 1.20406 0.95593 1.06133 0.87351 1.25402 0.97137 0.99835 0.95129 1.70153 1.34817 1.34143 1.12803 0.85752 0.78299 0.81416 0.78666 1.19012 1.20626 1.20480 1.21237 0.88034 0.87250 0.96151 1.98421 1.69381 1.34166 1.95903 1.66537 1.41114 0.97703 1.21262 0.92183 0.88710 0.92218 0.83394 0.82826 0.92061 0.95757 0.89488 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.37 101.05 1.05 1.46 16 2 O -0.31 -4.10 10.46 -18.21 -0.19 -4.29 16 3 C 0.33 5.15 7.49 -16.96 -0.13 5.03 16 4 C -0.19 -2.70 9.97 -39.71 -0.40 -3.10 16 5 C -0.01 -0.17 7.65 -39.27 -0.30 -0.47 16 6 C -0.15 -3.12 4.72 -104.79 -0.49 -3.62 16 7 C 0.47 11.56 6.62 -12.51 -0.08 11.48 16 8 O -0.58 -15.82 15.58 5.26 0.08 -15.74 16 9 N -0.43 -10.81 3.02 -123.42 -0.37 -11.18 16 10 C 0.10 2.31 7.97 59.85 0.48 2.79 16 11 C -0.29 -7.89 9.52 -15.00 -0.14 -8.04 16 12 H 0.11 3.06 7.23 -52.48 -0.38 2.68 16 13 C 0.03 0.70 5.45 -17.45 -0.10 0.61 16 14 N -0.88 -22.12 9.48 55.50 0.53 -21.60 16 15 Si 0.93 20.12 29.56 -169.99 -5.02 15.09 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.24 4.63 7.31 -16.97 -0.12 4.51 16 20 Cl -0.01 -0.15 27.40 -51.86 -1.42 -1.57 16 21 N -0.54 -9.44 9.17 -10.04 -0.09 -9.53 16 22 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 23 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 25 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.15 2.33 7.59 -52.49 -0.40 1.93 16 27 H 0.06 1.36 7.53 -51.93 -0.39 0.97 16 28 H 0.02 0.47 5.01 -51.93 -0.26 0.21 16 29 H 0.09 2.08 6.52 -51.93 -0.34 1.75 16 30 H 0.27 6.37 8.31 -40.82 -0.34 6.04 16 LS Contribution 277.66 15.07 4.18 4.18 Total: -1.00 -29.84 277.66 -5.14 -34.98 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -2.59 Total: -1.00 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.24 Total: 10.65 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.06 Total: -42.31 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.11 Total: -20.03 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.42 Total: -1.57 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.84 -5.14 -34.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241783.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.216 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds