Wall clock time and date at job start Mon Mar 30 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35505 * 117.00300 * 2 1 4 4 C 1.39161 * 119.49768 * 180.02562 * 3 2 1 5 5 C 1.36946 * 119.43532 * 180.02562 * 4 3 2 6 6 C 1.40310 * 118.48344 * 0.02562 * 5 4 3 7 7 C 1.47435 * 120.51213 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99979 * 231.00674 * 7 6 5 9 9 N 1.34778 * 119.99620 * 51.01139 * 7 6 5 10 10 C 1.46499 * 120.00301 * 5.97520 * 9 7 6 11 11 C 1.36913 * 119.99697 * 185.97665 * 9 7 6 12 12 H 1.08004 * 119.99966 * 8.08010 * 11 9 7 13 13 C 1.39013 * 120.00251 * 187.81241 * 11 9 7 14 14 N 1.31393 * 119.99644 * 352.32034 * 13 11 9 15 15 Si 1.86798 * 120.00432 * 172.32489 * 13 11 9 16 16 H 1.48501 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47402 * 119.99788 * 15 13 11 18 18 H 1.48506 * 109.47054 * 239.99875 * 15 13 11 19 19 C 1.39804 * 118.98242 * 0.25149 * 6 5 4 20 20 Cl 1.73593 * 119.77818 * 179.72731 * 19 6 5 21 21 N 1.31833 * 120.44024 * 359.47625 * 19 6 5 22 22 H 1.09002 * 109.47459 * 59.99486 * 1 2 3 23 23 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47028 * 299.99616 * 1 2 3 25 25 H 1.07991 * 120.28447 * 0.04543 * 4 3 2 26 26 H 1.07996 * 120.76032 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47126 * 243.47030 * 10 9 7 28 28 H 1.09002 * 109.46778 * 3.46750 * 10 9 7 29 29 H 1.09001 * 109.47194 * 123.46804 * 10 9 7 30 30 H 0.96996 * 119.99863 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2679 -0.0005 5 6 4.0549 2.4887 0.0000 6 6 3.2587 3.6440 0.0016 7 6 3.8797 4.9812 0.0028 8 8 3.5351 5.8110 0.8225 9 7 4.8292 5.2840 -0.9045 10 6 5.1516 4.3341 -1.9723 11 6 5.4925 6.4793 -0.8284 12 1 5.3509 7.1218 0.0282 13 6 6.3524 6.8634 -1.8508 14 7 6.6462 6.0194 -2.8140 15 14 7.0905 8.5794 -1.8553 16 1 6.6048 9.3303 -0.6697 17 1 8.5715 8.4815 -1.8072 18 1 6.6813 9.2910 -3.0929 19 6 1.8673 3.5078 0.0080 20 17 0.8625 4.9233 0.0173 21 7 1.3133 2.3115 0.0020 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0191 0.3600 -0.0017 26 1 5.1325 2.5607 0.0000 27 1 6.1839 4.0016 -1.8633 28 1 4.4843 3.4747 -1.9076 29 1 5.0264 4.8194 -2.9403 30 1 7.2465 6.2873 -3.5272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931241783.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:34 Heat of formation + Delta-G solvation = -37.731011 kcal Electronic energy + Delta-G solvation = -18378.135778 eV Core-core repulsion = 15200.268451 eV Total energy + Delta-G solvation = -3177.867328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.97396 -40.32592 -38.78043 -37.60186 -36.70595 -34.20745 -33.30941 -31.80177 -28.47799 -28.24763 -26.59801 -24.82925 -24.34335 -21.46440 -19.61927 -19.07174 -18.60313 -18.03156 -17.16907 -16.84967 -16.27194 -15.98824 -15.72840 -15.35922 -15.09239 -14.84616 -14.53111 -13.88458 -13.63443 -13.43912 -13.02458 -12.85863 -12.81130 -12.69521 -12.36287 -12.24116 -12.10895 -11.82331 -11.16269 -11.01996 -10.98086 -10.42713 -9.91408 -9.55998 -8.28710 -5.90445 -0.35182 -0.04200 0.66101 1.37026 1.43537 1.56916 1.93149 1.98307 2.23805 2.47875 2.91863 3.12768 3.30995 3.72710 3.84434 4.01124 4.17406 4.43175 4.44974 4.57215 4.62482 4.77478 4.95319 5.11875 5.15313 5.42923 5.51318 5.94181 6.02355 6.38931 6.45183 7.12660 7.40506 7.96504 8.62509 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.031212 B = 0.005613 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.872981 B = 4987.621305 C = 5570.653047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.299 6.299 3 C 0.337 3.663 4 C -0.166 4.166 5 C -0.005 4.005 6 C -0.182 4.182 7 C 0.472 3.528 8 O -0.616 6.616 9 N -0.444 5.444 10 C 0.119 3.881 11 C -0.334 4.334 12 H 0.081 0.919 13 C 0.000 4.000 14 N -0.888 5.888 15 Si 0.992 3.008 16 H -0.276 1.276 17 H -0.267 1.267 18 H -0.272 1.272 19 C 0.228 3.772 20 Cl -0.022 7.022 21 N -0.545 5.545 22 H 0.056 0.944 23 H 0.133 0.867 24 H 0.055 0.945 25 H 0.193 0.807 26 H 0.168 0.832 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -12.872 0.645 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.205 6.205 3 C 0.156 3.844 4 C -0.186 4.186 5 C -0.031 4.031 6 C -0.190 4.190 7 C 0.261 3.739 8 O -0.504 6.504 9 N -0.160 5.160 10 C -0.023 4.023 11 C -0.462 4.462 12 H 0.099 0.901 13 C -0.201 4.201 14 N -0.528 5.528 15 Si 0.816 3.184 16 H -0.200 1.200 17 H -0.192 1.192 18 H -0.197 1.197 19 C 0.065 3.935 20 Cl 0.007 6.993 21 N -0.272 5.272 22 H 0.075 0.925 23 H 0.151 0.849 24 H 0.074 0.926 25 H 0.210 0.790 26 H 0.186 0.814 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.861 -12.693 0.817 14.451 hybrid contribution 0.702 1.380 -0.102 1.552 sum -6.159 -11.312 0.716 12.900 Atomic orbital electron populations 1.23164 0.75504 1.05215 1.02356 1.86233 1.24586 1.22587 1.87109 1.20068 0.89903 0.83774 0.90653 1.21131 0.91281 1.00271 1.05941 1.21550 1.01559 0.89310 0.90664 1.20574 0.92871 0.96184 1.09339 1.17832 0.83407 0.87522 0.85168 1.90607 1.65926 1.50952 1.42955 1.43814 1.30864 1.16760 1.24579 1.21900 0.99228 0.90305 0.90895 1.19803 1.22852 0.96910 1.06649 0.90066 1.26069 0.96780 1.02909 0.94383 1.70225 1.34639 1.35105 1.12781 0.84889 0.78068 0.77208 0.78279 1.20025 1.19177 1.19696 1.21178 0.87672 0.87709 0.96947 1.98408 1.69652 1.35238 1.96044 1.66545 1.41393 0.97462 1.21848 0.92541 0.84887 0.92625 0.79031 0.81442 0.92390 0.92889 0.91526 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.37 113.37 1.18 1.74 16 2 O -0.30 -6.84 10.46 -88.07 -0.92 -7.76 16 3 C 0.34 9.38 7.49 84.83 0.64 10.02 16 4 C -0.17 -4.09 9.97 22.19 0.22 -3.87 16 5 C -0.01 -0.16 7.65 22.47 0.17 0.01 16 6 C -0.18 -7.34 4.72 -19.97 -0.09 -7.43 16 7 C 0.47 23.70 6.62 86.67 0.57 24.27 16 8 O -0.62 -35.34 15.58 -4.11 -0.06 -35.40 16 9 N -0.44 -22.82 3.02 -662.63 -2.00 -24.82 16 10 C 0.12 5.27 7.97 127.77 1.02 6.29 16 11 C -0.33 -18.64 9.52 84.09 0.80 -17.84 16 12 H 0.08 4.85 7.23 -2.91 -0.02 4.83 16 13 C 0.00 0.02 5.45 84.94 0.46 0.48 16 14 N -0.89 -44.54 9.48 21.68 0.21 -44.33 16 15 Si 0.99 41.45 29.56 68.60 2.03 43.48 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 19 C 0.23 8.83 7.31 85.07 0.62 9.45 16 20 Cl -0.02 -0.89 27.40 -2.72 -0.07 -0.96 16 21 N -0.55 -18.14 9.17 -298.54 -2.74 -20.88 16 22 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 23 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 25 H 0.19 3.09 8.06 -2.92 -0.02 3.07 16 26 H 0.17 4.67 7.59 -2.91 -0.02 4.64 16 27 H 0.06 2.55 7.53 -2.39 -0.02 2.54 16 28 H 0.05 1.99 5.01 -2.39 -0.01 1.98 16 29 H 0.07 3.20 6.52 -2.39 -0.02 3.19 16 30 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 Total: -1.00 -66.31 277.66 3.20 -63.10 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.18 Total: 4.47 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 5.59 Total: 23.11 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -4.53 Total: -90.04 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.99 Total: -43.16 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.07 Total: -0.96 kcal Total: -66.31 3.20 -63.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241783.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.371 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds