Wall clock time and date at job start Mon Mar 30 2020 00:55:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86796 * 119.99866 * 2 1
4 4 H 1.48502 * 109.47534 * 270.00312 * 3 2 1
5 5 H 1.48502 * 109.47140 * 30.00778 * 3 2 1
6 6 H 1.48510 * 109.46914 * 150.00340 * 3 2 1
7 7 C 1.38811 * 120.00060 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99933 * 179.97438 * 7 2 1
9 9 N 1.36940 * 119.99753 * 359.97438 * 7 2 1
10 10 C 1.47583 * 134.49069 * 180.02562 * 9 7 2
11 11 C 1.53945 * 86.11651 * 155.35576 * 10 9 7
12 12 N 1.46499 * 113.73861 * 137.95287 * 11 10 9
13 13 C 1.34779 * 119.99782 * 156.92904 * 12 11 10
14 14 O 1.21710 * 119.99933 * 359.97438 * 13 12 11
15 15 C 1.46521 * 119.99906 * 180.02562 * 13 12 11
16 16 C 1.36610 * 125.97824 * 179.97438 * 15 13 12
17 17 C 1.40255 * 106.73901 * 179.97438 * 16 15 13
18 18 C 1.35362 * 107.11400 * 0.02562 * 17 16 15
19 19 Cl 1.73602 * 125.62862 * 179.97438 * 18 17 16
20 20 O 1.33950 * 108.74228 * 359.97438 * 18 17 16
21 21 C 1.47812 * 134.45959 * 359.86860 * 9 7 2
22 22 H 0.96997 * 120.00078 * 359.97438 * 1 2 3
23 23 H 1.08998 * 113.76889 * 41.05324 * 10 9 7
24 24 H 1.08998 * 113.77028 * 269.65948 * 10 9 7
25 25 H 1.08997 * 113.74198 * 269.15368 * 11 10 9
26 26 H 0.96999 * 119.99928 * 336.92049 * 12 11 10
27 27 H 1.08002 * 126.63402 * 0.25800 * 16 15 13
28 28 H 1.07995 * 126.43925 * 180.02562 * 17 16 15
29 29 H 1.08998 * 113.77061 * 90.37744 * 21 9 7
30 30 H 1.09006 * 113.83364 * 318.91625 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6526 0.7002
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 1.7201 -3.8101 -0.0005
11 6 0.3470 -4.0829 0.6399
12 7 -0.3333 -5.2613 0.0970
13 6 -1.2733 -5.8930 0.8278
14 8 -1.5565 -5.4848 1.9388
15 6 -1.9533 -7.0720 0.2851
16 6 -2.9194 -7.8028 0.9165
17 6 -3.2863 -8.8323 0.0376
18 6 -2.5364 -8.6880 -1.0801
19 17 -2.6026 -9.7107 -2.4813
20 8 -1.7349 -7.6259 -0.9264
21 6 -0.1058 -2.7571 0.0024
22 1 -0.4850 0.8400 0.0004
23 1 2.5624 -4.0324 0.6546
24 1 1.8318 -4.2351 -0.9980
25 1 0.3595 -4.0639 1.7296
26 1 -0.1074 -5.5868 -0.7883
27 1 -3.3259 -7.6201 1.9003
28 1 -4.0276 -9.5965 0.2185
29 1 -0.5320 -2.8718 -0.9943
30 1 -0.7184 -2.1402 0.6599
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001030109986.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:55:55
Heat of formation + Delta-G solvation = 40.044092 kcal
Electronic energy + Delta-G solvation = -17629.526850 eV
Core-core repulsion = 14455.032104 eV
Total energy + Delta-G solvation = -3174.494746 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.98235 -39.50779 -37.59506 -37.36151 -33.90648 -33.29254 -31.90294 -29.93146
-27.46561 -24.89113 -24.20934 -22.44501 -22.16143 -20.41126 -19.76573 -18.51521
-16.89644 -16.84853 -16.79202 -15.91749 -15.00317 -14.43974 -14.28410 -13.90069
-13.75903 -13.46164 -13.34829 -12.75060 -12.49101 -11.98632 -11.76240 -11.53411
-11.50407 -10.93464 -10.82559 -10.52186 -10.37961 -10.22407 -9.96122 -9.58577
-8.91058 -8.84375 -8.54106 -6.96465 -5.80517 -3.14931 0.74121 0.77022
1.95418 2.84603 3.18665 3.37147 3.40812 3.45121 3.46337 4.42274
4.49120 4.72224 5.08105 5.13541 5.30901 5.43298 5.48483 5.49923
5.91812 5.92991 6.12314 6.31560 6.38034 6.47382 6.61064 7.18355
7.27304 7.49578 7.67487 7.92507 8.21875 8.99290 9.65752 10.50984
11.36253
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.039821 B = 0.003495 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.984140 B = 8008.509927 C = 8299.946591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.005 4.005
3 Si 0.915 3.085
4 H -0.288 1.288
5 H -0.289 1.289
6 H -0.280 1.280
7 C -0.227 4.227
8 H 0.083 0.917
9 N -0.606 5.606
10 C 0.114 3.886
11 C 0.089 3.911
12 N -0.700 5.700
13 C 0.598 3.402
14 O -0.515 6.515
15 C -0.046 4.046
16 C -0.121 4.121
17 C -0.183 4.183
18 C 0.043 3.957
19 Cl 0.030 6.970
20 O -0.155 6.155
21 C 0.154 3.846
22 H 0.255 0.745
23 H 0.052 0.948
24 H 0.037 0.963
25 H 0.115 0.885
26 H 0.402 0.598
27 H 0.171 0.829
28 H 0.167 0.833
29 H 0.030 0.970
30 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.912 -19.856 -2.546 20.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.202 4.202
3 Si 0.745 3.255
4 H -0.215 1.215
5 H -0.215 1.215
6 H -0.205 1.205
7 C -0.355 4.355
8 H 0.100 0.900
9 N -0.333 5.333
10 C -0.013 4.013
11 C -0.016 4.016
12 N -0.349 5.349
13 C 0.382 3.618
14 O -0.393 6.393
15 C -0.099 4.099
16 C -0.142 4.142
17 C -0.203 4.203
18 C -0.036 4.036
19 Cl 0.059 6.941
20 O -0.052 6.052
21 C 0.028 3.972
22 H 0.065 0.935
23 H 0.070 0.930
24 H 0.054 0.946
25 H 0.133 0.867
26 H 0.237 0.763
27 H 0.188 0.812
28 H 0.184 0.816
29 H 0.048 0.952
30 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -5.832 -19.128 -2.077 20.105
hybrid contribution 0.403 0.493 -0.861 1.071
sum -5.430 -18.636 -2.938 19.632
Atomic orbital electron populations
1.69821 1.05076 1.25588 1.55973 1.24825 0.95704 0.97688 1.02019
0.86079 0.78632 0.83189 0.77585 1.21547 1.21530 1.20504 1.18987
0.90276 0.81533 1.44674 0.89958 1.45709 1.02328 0.99162 1.86088
1.22870 0.94393 0.86888 0.97190 1.24099 0.93611 0.83691 1.00178
1.46135 1.38544 1.30453 1.19766 1.16505 0.79896 0.80397 0.84976
1.90913 1.64553 1.64966 1.18877 1.22521 1.03710 0.99542 0.84139
1.21944 0.96614 0.94023 1.01577 1.21525 1.03739 1.02884 0.92153
1.22809 0.97080 0.90742 0.92926 1.98448 1.97022 1.60485 1.38162
1.84003 1.51855 1.35278 1.34065 1.22728 0.88295 0.88817 0.97376
0.93463 0.92971 0.94555 0.86693 0.76316 0.81174 0.81575 0.95181
0.90236
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.36 11.39 55.49 0.63 -26.73 16
2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16
3 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16
4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
7 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16
8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16
9 N -0.61 -15.46 3.70 -177.89 -0.66 -16.12 16
10 C 0.11 2.24 8.69 -2.97 -0.03 2.21 16
11 C 0.09 1.70 4.40 -70.15 -0.31 1.39 16
12 N -0.70 -11.07 5.37 -56.71 -0.30 -11.37 16
13 C 0.60 9.66 7.78 -12.92 -0.10 9.56 16
14 O -0.52 -9.91 16.48 5.18 0.09 -9.83 16
15 C -0.05 -0.62 7.13 -36.83 -0.26 -0.88 16
16 C -0.12 -1.36 10.62 -39.41 -0.42 -1.78 16
17 C -0.18 -1.71 10.84 -39.85 -0.43 -2.15 16
18 C 0.04 0.45 7.93 29.71 0.24 0.68 16
19 Cl 0.03 0.26 29.30 -51.86 -1.52 -1.26 16
20 O -0.16 -1.92 10.40 4.73 0.05 -1.88 16
21 C 0.15 3.67 7.32 -2.85 -0.02 3.64 16
22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
24 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16
25 H 0.12 2.34 7.50 -51.93 -0.39 1.95 16
26 H 0.40 5.46 8.46 -40.82 -0.35 5.11 16
27 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16
28 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16
29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.08 2.14 7.17 -51.93 -0.37 1.77 16
LS Contribution 288.22 15.07 4.34 4.34
Total: -1.00 -31.76 288.22 -6.75 -38.51
By element:
Atomic # 1 Polarization: 4.13 SS G_CDS: -2.77 Total: 1.37 kcal
Atomic # 6 Polarization: 7.51 SS G_CDS: -1.59 Total: 5.92 kcal
Atomic # 7 Polarization: -53.89 SS G_CDS: -0.33 Total: -54.22 kcal
Atomic # 8 Polarization: -11.84 SS G_CDS: 0.13 Total: -11.70 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal
Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -31.76 -6.75 -38.51 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001030109986.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.553 kcal
(2) G-P(sol) polarization free energy of solvation -31.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds