Wall clock time and date at job start Mon Mar 30 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47534 * 270.00312 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00778 * 3 2 1 6 6 H 1.48510 * 109.46914 * 150.00340 * 3 2 1 7 7 C 1.38811 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49069 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11651 * 155.35576 * 10 9 7 12 12 N 1.46499 * 113.73861 * 137.95287 * 11 10 9 13 13 C 1.34779 * 119.99782 * 156.92904 * 12 11 10 14 14 O 1.21710 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.46521 * 119.99906 * 180.02562 * 13 12 11 16 16 C 1.36610 * 125.97824 * 179.97438 * 15 13 12 17 17 C 1.40255 * 106.73901 * 179.97438 * 16 15 13 18 18 C 1.35362 * 107.11400 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 125.62862 * 179.97438 * 18 17 16 20 20 O 1.33950 * 108.74228 * 359.97438 * 18 17 16 21 21 C 1.47812 * 134.45959 * 359.86860 * 9 7 2 22 22 H 0.96997 * 120.00078 * 359.97438 * 1 2 3 23 23 H 1.08998 * 113.76889 * 41.05324 * 10 9 7 24 24 H 1.08998 * 113.77028 * 269.65948 * 10 9 7 25 25 H 1.08997 * 113.74198 * 269.15368 * 11 10 9 26 26 H 0.96999 * 119.99928 * 336.92049 * 12 11 10 27 27 H 1.08002 * 126.63402 * 0.25800 * 16 15 13 28 28 H 1.07995 * 126.43925 * 180.02562 * 17 16 15 29 29 H 1.08998 * 113.77061 * 90.37744 * 21 9 7 30 30 H 1.09006 * 113.83364 * 318.91625 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0005 11 6 0.3470 -4.0829 0.6399 12 7 -0.3333 -5.2613 0.0970 13 6 -1.2733 -5.8930 0.8278 14 8 -1.5565 -5.4848 1.9388 15 6 -1.9533 -7.0720 0.2851 16 6 -2.9194 -7.8028 0.9165 17 6 -3.2863 -8.8323 0.0376 18 6 -2.5364 -8.6880 -1.0801 19 17 -2.6026 -9.7107 -2.4813 20 8 -1.7349 -7.6259 -0.9264 21 6 -0.1058 -2.7571 0.0024 22 1 -0.4850 0.8400 0.0004 23 1 2.5624 -4.0324 0.6546 24 1 1.8318 -4.2351 -0.9980 25 1 0.3595 -4.0639 1.7296 26 1 -0.1074 -5.5868 -0.7883 27 1 -3.3259 -7.6201 1.9003 28 1 -4.0276 -9.5965 0.2185 29 1 -0.5320 -2.8718 -0.9943 30 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030109986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:55 Heat of formation + Delta-G solvation = 40.044092 kcal Electronic energy + Delta-G solvation = -17629.526850 eV Core-core repulsion = 14455.032104 eV Total energy + Delta-G solvation = -3174.494746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.98235 -39.50779 -37.59506 -37.36151 -33.90648 -33.29254 -31.90294 -29.93146 -27.46561 -24.89113 -24.20934 -22.44501 -22.16143 -20.41126 -19.76573 -18.51521 -16.89644 -16.84853 -16.79202 -15.91749 -15.00317 -14.43974 -14.28410 -13.90069 -13.75903 -13.46164 -13.34829 -12.75060 -12.49101 -11.98632 -11.76240 -11.53411 -11.50407 -10.93464 -10.82559 -10.52186 -10.37961 -10.22407 -9.96122 -9.58577 -8.91058 -8.84375 -8.54106 -6.96465 -5.80517 -3.14931 0.74121 0.77022 1.95418 2.84603 3.18665 3.37147 3.40812 3.45121 3.46337 4.42274 4.49120 4.72224 5.08105 5.13541 5.30901 5.43298 5.48483 5.49923 5.91812 5.92991 6.12314 6.31560 6.38034 6.47382 6.61064 7.18355 7.27304 7.49578 7.67487 7.92507 8.21875 8.99290 9.65752 10.50984 11.36253 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039821 B = 0.003495 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.984140 B = 8008.509927 C = 8299.946591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.089 3.911 12 N -0.700 5.700 13 C 0.598 3.402 14 O -0.515 6.515 15 C -0.046 4.046 16 C -0.121 4.121 17 C -0.183 4.183 18 C 0.043 3.957 19 Cl 0.030 6.970 20 O -0.155 6.155 21 C 0.154 3.846 22 H 0.255 0.745 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.115 0.885 26 H 0.402 0.598 27 H 0.171 0.829 28 H 0.167 0.833 29 H 0.030 0.970 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -19.856 -2.546 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.013 4.013 11 C -0.016 4.016 12 N -0.349 5.349 13 C 0.382 3.618 14 O -0.393 6.393 15 C -0.099 4.099 16 C -0.142 4.142 17 C -0.203 4.203 18 C -0.036 4.036 19 Cl 0.059 6.941 20 O -0.052 6.052 21 C 0.028 3.972 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.133 0.867 26 H 0.237 0.763 27 H 0.188 0.812 28 H 0.184 0.816 29 H 0.048 0.952 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.832 -19.128 -2.077 20.105 hybrid contribution 0.403 0.493 -0.861 1.071 sum -5.430 -18.636 -2.938 19.632 Atomic orbital electron populations 1.69821 1.05076 1.25588 1.55973 1.24825 0.95704 0.97688 1.02019 0.86079 0.78632 0.83189 0.77585 1.21547 1.21530 1.20504 1.18987 0.90276 0.81533 1.44674 0.89958 1.45709 1.02328 0.99162 1.86088 1.22870 0.94393 0.86888 0.97190 1.24099 0.93611 0.83691 1.00178 1.46135 1.38544 1.30453 1.19766 1.16505 0.79896 0.80397 0.84976 1.90913 1.64553 1.64966 1.18877 1.22521 1.03710 0.99542 0.84139 1.21944 0.96614 0.94023 1.01577 1.21525 1.03739 1.02884 0.92153 1.22809 0.97080 0.90742 0.92926 1.98448 1.97022 1.60485 1.38162 1.84003 1.51855 1.35278 1.34065 1.22728 0.88295 0.88817 0.97376 0.93463 0.92971 0.94555 0.86693 0.76316 0.81174 0.81575 0.95181 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.36 11.39 55.49 0.63 -26.73 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.61 -15.46 3.70 -177.89 -0.66 -16.12 16 10 C 0.11 2.24 8.69 -2.97 -0.03 2.21 16 11 C 0.09 1.70 4.40 -70.15 -0.31 1.39 16 12 N -0.70 -11.07 5.37 -56.71 -0.30 -11.37 16 13 C 0.60 9.66 7.78 -12.92 -0.10 9.56 16 14 O -0.52 -9.91 16.48 5.18 0.09 -9.83 16 15 C -0.05 -0.62 7.13 -36.83 -0.26 -0.88 16 16 C -0.12 -1.36 10.62 -39.41 -0.42 -1.78 16 17 C -0.18 -1.71 10.84 -39.85 -0.43 -2.15 16 18 C 0.04 0.45 7.93 29.71 0.24 0.68 16 19 Cl 0.03 0.26 29.30 -51.86 -1.52 -1.26 16 20 O -0.16 -1.92 10.40 4.73 0.05 -1.88 16 21 C 0.15 3.67 7.32 -2.85 -0.02 3.64 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 25 H 0.12 2.34 7.50 -51.93 -0.39 1.95 16 26 H 0.40 5.46 8.46 -40.82 -0.35 5.11 16 27 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 2.14 7.17 -51.93 -0.37 1.77 16 LS Contribution 288.22 15.07 4.34 4.34 Total: -1.00 -31.76 288.22 -6.75 -38.51 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.77 Total: 1.37 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.59 Total: 5.92 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.33 Total: -54.22 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.13 Total: -11.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.76 -6.75 -38.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030109986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.553 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds