Wall clock time and date at job start Mon Mar 30 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47534 * 270.00312 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00778 * 3 2 1 6 6 H 1.48510 * 109.46914 * 150.00340 * 3 2 1 7 7 C 1.38811 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49069 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11651 * 155.35576 * 10 9 7 12 12 N 1.46499 * 113.73861 * 137.95287 * 11 10 9 13 13 C 1.34779 * 119.99782 * 156.92904 * 12 11 10 14 14 O 1.21710 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.46521 * 119.99906 * 180.02562 * 13 12 11 16 16 C 1.36610 * 125.97824 * 179.97438 * 15 13 12 17 17 C 1.40255 * 106.73901 * 179.97438 * 16 15 13 18 18 C 1.35362 * 107.11400 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 125.62862 * 179.97438 * 18 17 16 20 20 O 1.33950 * 108.74228 * 359.97438 * 18 17 16 21 21 C 1.47812 * 134.45959 * 359.86860 * 9 7 2 22 22 H 0.96997 * 120.00078 * 359.97438 * 1 2 3 23 23 H 1.08998 * 113.76889 * 41.05324 * 10 9 7 24 24 H 1.08998 * 113.77028 * 269.65948 * 10 9 7 25 25 H 1.08997 * 113.74198 * 269.15368 * 11 10 9 26 26 H 0.96999 * 119.99928 * 336.92049 * 12 11 10 27 27 H 1.08002 * 126.63402 * 0.25800 * 16 15 13 28 28 H 1.07995 * 126.43925 * 180.02562 * 17 16 15 29 29 H 1.08998 * 113.77061 * 90.37744 * 21 9 7 30 30 H 1.09006 * 113.83364 * 318.91625 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0005 11 6 0.3470 -4.0829 0.6399 12 7 -0.3333 -5.2613 0.0970 13 6 -1.2733 -5.8930 0.8278 14 8 -1.5565 -5.4848 1.9388 15 6 -1.9533 -7.0720 0.2851 16 6 -2.9194 -7.8028 0.9165 17 6 -3.2863 -8.8323 0.0376 18 6 -2.5364 -8.6880 -1.0801 19 17 -2.6026 -9.7107 -2.4813 20 8 -1.7349 -7.6259 -0.9264 21 6 -0.1058 -2.7571 0.0024 22 1 -0.4850 0.8400 0.0004 23 1 2.5624 -4.0324 0.6546 24 1 1.8318 -4.2351 -0.9980 25 1 0.3595 -4.0639 1.7296 26 1 -0.1074 -5.5868 -0.7883 27 1 -3.3259 -7.6201 1.9003 28 1 -4.0276 -9.5965 0.2185 29 1 -0.5320 -2.8718 -0.9943 30 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030109986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:55 Heat of formation + Delta-G solvation = 17.885614 kcal Electronic energy + Delta-G solvation = -17630.487713 eV Core-core repulsion = 14455.032104 eV Total energy + Delta-G solvation = -3175.455610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.88131 -40.94796 -39.22525 -38.11714 -35.35033 -34.33828 -33.80164 -31.00191 -29.32654 -26.66272 -25.72055 -23.89444 -23.06407 -21.56458 -21.38762 -19.64661 -18.80156 -17.90861 -17.75891 -17.42237 -16.96118 -15.86145 -15.74258 -15.59637 -14.65976 -14.54588 -14.42576 -14.17676 -13.68503 -13.37730 -13.26012 -13.22049 -12.85526 -12.65486 -12.48890 -12.33551 -11.98170 -11.59096 -11.43544 -11.22312 -10.90040 -10.19508 -9.66695 -8.99771 -7.93045 -5.28857 -0.24173 -0.03397 1.10635 1.46161 1.48745 1.57630 1.75274 1.99525 2.27665 2.50066 3.22842 3.37405 3.66573 3.75161 3.77648 4.24306 4.29007 4.40351 4.45976 4.71955 4.76302 4.87293 5.00333 5.11802 5.20465 5.43402 5.47096 5.62421 5.87178 6.37719 6.86656 6.95252 7.56753 8.48605 9.23828 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039821 B = 0.003495 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.984140 B = 8008.509927 C = 8299.946591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.984 3.016 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.122 3.878 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.601 3.399 14 O -0.553 6.553 15 C -0.076 4.076 16 C -0.107 4.107 17 C -0.172 4.172 18 C 0.041 3.959 19 Cl 0.050 6.950 20 O -0.165 6.165 21 C 0.151 3.849 22 H 0.249 0.751 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.416 0.584 27 H 0.181 0.819 28 H 0.201 0.799 29 H 0.025 0.975 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -21.889 -3.133 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.365 5.365 10 C -0.003 4.003 11 C 0.013 3.987 12 N -0.342 5.342 13 C 0.388 3.612 14 O -0.433 6.433 15 C -0.129 4.129 16 C -0.127 4.127 17 C -0.192 4.192 18 C -0.037 4.037 19 Cl 0.079 6.921 20 O -0.062 6.062 21 C 0.024 3.976 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.253 0.747 27 H 0.199 0.801 28 H 0.218 0.782 29 H 0.043 0.957 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.456 -21.225 -2.691 22.080 hybrid contribution 0.233 0.944 -0.744 1.224 sum -5.224 -20.281 -3.435 21.223 Atomic orbital electron populations 1.70030 1.06686 1.25801 1.57823 1.25722 0.96562 1.01234 1.02582 0.85002 0.77700 0.78615 0.77523 1.21156 1.22225 1.18919 1.19446 0.91031 0.82805 1.43227 0.89055 1.46039 1.03230 1.00833 1.86383 1.23015 0.94902 0.83610 0.98770 1.23364 0.93215 0.82981 0.99128 1.45860 1.38557 1.29390 1.20401 1.16738 0.79229 0.80788 0.84404 1.90889 1.65626 1.66351 1.20477 1.21911 1.05504 0.99983 0.85467 1.22263 0.95041 0.93471 1.01974 1.21904 1.03703 1.02711 0.90875 1.23237 0.96451 0.90139 0.93908 1.98462 1.96867 1.59597 1.37207 1.83958 1.52611 1.36066 1.33609 1.22610 0.87518 0.90869 0.96575 0.94210 0.91178 0.91827 0.87867 0.74749 0.80115 0.78158 0.95744 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 11.39 21.65 0.25 -58.55 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.24 -13.29 10.70 84.03 0.90 -12.39 16 8 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.64 -32.73 3.70 -716.71 -2.65 -35.39 16 10 C 0.12 4.67 8.69 86.49 0.75 5.42 16 11 C 0.12 4.58 4.40 46.74 0.21 4.79 16 12 N -0.69 -21.56 5.37 -451.54 -2.42 -23.98 16 13 C 0.60 19.32 7.78 86.40 0.67 19.99 16 14 O -0.55 -21.56 16.48 -4.38 -0.07 -21.63 16 15 C -0.08 -1.96 7.13 24.05 0.17 -1.79 16 16 C -0.11 -2.19 10.62 22.38 0.24 -1.95 16 17 C -0.17 -2.68 10.84 22.10 0.24 -2.44 16 18 C 0.04 0.75 7.93 67.16 0.53 1.28 16 19 Cl 0.05 0.72 29.30 -2.72 -0.08 0.64 16 20 O -0.16 -3.81 10.40 -6.00 -0.06 -3.87 16 21 C 0.15 7.41 7.32 86.44 0.63 8.04 16 22 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 25 H 0.10 4.28 7.50 -2.39 -0.02 4.26 16 26 H 0.42 10.77 8.46 -92.71 -0.78 9.98 16 27 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 28 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 2.19 7.17 -2.38 -0.02 2.17 16 Total: -1.00 -70.01 288.22 2.19 -67.81 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.40 Total: 9.57 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 4.81 Total: 17.51 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -4.83 Total: -117.93 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.13 Total: -25.50 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -70.01 2.19 -67.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030109986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.699 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds