Wall clock time and date at job start Mon Mar 30 2020 00:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99721 * 186.41920 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46500 * 114.26822 * 139.79275 * 11 10 9 13 13 C 1.34777 * 120.00034 * 111.47440 * 12 11 10 14 14 O 1.21739 * 120.00115 * 359.97438 * 13 12 11 15 15 C 1.46294 * 120.00249 * 180.02562 * 13 12 11 16 16 S 1.75822 * 125.46208 * 0.02562 * 15 13 12 17 17 C 1.70593 * 91.60664 * 179.97438 * 16 15 13 18 18 C 1.33729 * 111.04213 * 0.02562 * 17 16 15 19 19 C 1.36922 * 125.46784 * 179.71528 * 15 13 12 20 20 F 1.35101 * 123.40394 * 0.02562 * 19 15 13 21 21 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 22 22 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 24 24 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 25 25 H 1.09008 * 114.39164 * 272.67254 * 11 10 9 26 26 H 0.96996 * 119.99999 * 291.47680 * 12 11 10 27 27 H 1.08002 * 124.48222 * 179.97438 * 17 16 15 28 28 H 1.07997 * 122.45630 * 180.02562 * 18 17 16 29 29 H 1.08996 * 113.46819 * 321.85844 * 21 9 7 30 30 H 1.09006 * 113.46873 * 92.30541 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 -0.2832 -5.2810 -0.6718 13 6 -0.9854 -5.9188 -1.6292 14 8 -0.9755 -5.5002 -2.7723 15 6 -1.7606 -7.1135 -1.2944 16 16 -1.8780 -7.8389 0.3029 17 6 -2.9100 -9.0668 -0.2780 18 6 -3.1377 -8.9229 -1.5879 19 6 -2.5157 -7.8427 -2.1735 20 9 -2.6349 -7.5362 -3.4839 21 6 1.6717 -3.8136 -0.0623 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6458 -2.9419 0.5050 24 1 -0.5617 -2.1435 -1.1235 25 1 0.7431 -4.0157 -2.0656 26 1 -0.2914 -5.6143 0.2390 27 1 -3.3239 -9.8567 0.3313 28 1 -3.7677 -9.6008 -2.1446 29 1 2.6415 -4.0509 -0.4996 30 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030280611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:06 Heat of formation + Delta-G solvation = 17.931340 kcal Electronic energy + Delta-G solvation = -17688.017637 eV Core-core repulsion = 14526.980506 eV Total energy + Delta-G solvation = -3161.037131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.90910 -39.64242 -37.99038 -37.19113 -33.63382 -31.95845 -30.04173 -27.51627 -25.24063 -24.66208 -23.36882 -21.36942 -20.10333 -19.58554 -18.59863 -17.00460 -16.76785 -16.08219 -15.94175 -15.36629 -14.94332 -14.71098 -14.38554 -14.21991 -13.86499 -13.58549 -12.82364 -12.60448 -12.26090 -11.91412 -11.54592 -11.46782 -11.39195 -10.97954 -10.79044 -10.47678 -10.13640 -9.81835 -9.48398 -9.23012 -8.82117 -8.73723 -8.45920 -6.96489 -5.82463 -3.15227 0.15525 1.06433 1.47442 1.95124 3.22773 3.28299 3.39032 3.43902 3.46231 4.06362 4.43645 4.65430 4.77135 4.98888 5.19728 5.38318 5.41496 5.52060 5.56013 5.96275 6.04684 6.16775 6.35473 6.48914 6.66588 7.14948 7.28516 7.47596 7.71665 7.91294 8.36749 8.98212 9.64901 10.56270 11.35978 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.003929 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.761425 B = 7125.444795 C = 7408.744620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.289 1.289 7 C -0.223 4.223 8 H 0.084 0.916 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.086 3.914 12 N -0.705 5.705 13 C 0.586 3.414 14 O -0.521 6.521 15 C -0.307 4.307 16 S 0.256 5.744 17 C -0.215 4.215 18 C -0.177 4.177 19 C 0.157 3.843 20 F -0.104 7.104 21 C 0.110 3.890 22 H 0.255 0.745 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.119 0.881 26 H 0.394 0.606 27 H 0.179 0.821 28 H 0.157 0.843 29 H 0.048 0.952 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -20.227 2.141 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.350 4.350 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.025 3.975 11 C -0.019 4.019 12 N -0.355 5.355 13 C 0.371 3.629 14 O -0.399 6.399 15 C -0.429 4.429 16 S 0.522 5.478 17 C -0.353 4.353 18 C -0.209 4.209 19 C 0.122 3.878 20 F -0.082 7.082 21 C -0.017 4.017 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.227 0.773 27 H 0.196 0.804 28 H 0.175 0.825 29 H 0.066 0.934 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.192 -19.155 2.707 20.029 hybrid contribution -0.448 0.285 -0.951 1.089 sum -5.640 -18.870 1.755 19.773 Atomic orbital electron populations 1.69858 1.05137 1.25659 1.55569 1.24866 0.95688 0.97797 1.01827 0.86059 0.78748 0.83175 0.77509 1.21531 1.20375 1.21486 1.18914 0.90434 0.81118 1.44555 0.89801 1.45334 1.05611 0.99153 1.82705 1.22464 0.88732 0.89496 0.96847 1.23781 0.93486 0.83582 1.01045 1.45856 1.49165 1.29555 1.10946 1.16677 0.79101 0.81441 0.85638 1.90888 1.63140 1.66102 1.19767 1.24858 1.12574 1.06168 0.99253 1.83139 1.41722 1.17531 1.05437 1.25088 1.05323 1.05556 0.99328 1.19841 1.05660 1.00048 0.95397 1.16904 0.97079 0.94362 0.79443 1.91584 1.93842 1.92225 1.30545 1.22714 0.95875 0.87357 0.95742 0.93461 0.95039 0.91595 0.86279 0.77252 0.80367 0.82543 0.93403 0.94846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.57 11.81 55.49 0.66 -26.92 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.92 22.15 29.56 -169.99 -5.02 17.13 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.22 -6.28 10.73 -15.06 -0.16 -6.45 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 N -0.60 -15.57 3.76 -184.62 -0.69 -16.26 16 10 C 0.15 3.65 7.05 -8.37 -0.06 3.59 16 11 C 0.09 1.70 4.62 -67.68 -0.31 1.38 16 12 N -0.71 -11.37 5.39 -54.91 -0.30 -11.66 16 13 C 0.59 10.10 7.77 -13.02 -0.10 10.00 16 14 O -0.52 -11.15 15.73 5.15 0.08 -11.07 16 15 C -0.31 -4.13 6.45 -36.82 -0.24 -4.37 16 16 S 0.26 2.18 22.14 -107.50 -2.38 -0.20 16 17 C -0.21 -1.52 10.91 29.15 0.32 -1.20 16 18 C -0.18 -1.60 10.15 -41.35 -0.42 -2.02 16 19 C 0.16 2.04 7.48 -40.25 -0.30 1.74 16 20 F -0.10 -1.61 16.42 2.25 0.04 -1.58 16 21 C 0.11 2.22 8.44 -8.51 -0.07 2.15 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.79 7.57 -51.93 -0.39 1.40 16 25 H 0.12 2.55 7.45 -51.92 -0.39 2.16 16 26 H 0.39 5.15 7.86 -40.82 -0.32 4.83 16 27 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -34.24 284.81 -7.53 -41.77 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -2.76 Total: -0.11 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.44 Total: 4.61 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.34 Total: -54.84 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.38 Total: -0.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.24 -7.53 -41.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030280611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.703 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds