Wall clock time and date at job start Mon Mar 30 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99721 * 186.41920 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46500 * 114.26822 * 139.79275 * 11 10 9 13 13 C 1.34777 * 120.00034 * 111.47440 * 12 11 10 14 14 O 1.21739 * 120.00115 * 359.97438 * 13 12 11 15 15 C 1.46294 * 120.00249 * 180.02562 * 13 12 11 16 16 S 1.75822 * 125.46208 * 0.02562 * 15 13 12 17 17 C 1.70593 * 91.60664 * 179.97438 * 16 15 13 18 18 C 1.33729 * 111.04213 * 0.02562 * 17 16 15 19 19 C 1.36922 * 125.46784 * 179.71528 * 15 13 12 20 20 F 1.35101 * 123.40394 * 0.02562 * 19 15 13 21 21 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 22 22 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 24 24 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 25 25 H 1.09008 * 114.39164 * 272.67254 * 11 10 9 26 26 H 0.96996 * 119.99999 * 291.47680 * 12 11 10 27 27 H 1.08002 * 124.48222 * 179.97438 * 17 16 15 28 28 H 1.07997 * 122.45630 * 180.02562 * 18 17 16 29 29 H 1.08996 * 113.46819 * 321.85844 * 21 9 7 30 30 H 1.09006 * 113.46873 * 92.30541 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 -0.2832 -5.2810 -0.6718 13 6 -0.9854 -5.9188 -1.6292 14 8 -0.9755 -5.5002 -2.7723 15 6 -1.7606 -7.1135 -1.2944 16 16 -1.8780 -7.8389 0.3029 17 6 -2.9100 -9.0668 -0.2780 18 6 -3.1377 -8.9229 -1.5879 19 6 -2.5157 -7.8427 -2.1735 20 9 -2.6349 -7.5362 -3.4839 21 6 1.6717 -3.8136 -0.0623 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6458 -2.9419 0.5050 24 1 -0.5617 -2.1435 -1.1235 25 1 0.7431 -4.0157 -2.0656 26 1 -0.2914 -5.6143 0.2390 27 1 -3.3239 -9.8567 0.3313 28 1 -3.7677 -9.6008 -2.1446 29 1 2.6415 -4.0509 -0.4996 30 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030280611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:05 Heat of formation + Delta-G solvation = -7.058708 kcal Electronic energy + Delta-G solvation = -17689.101287 eV Core-core repulsion = 14526.980506 eV Total energy + Delta-G solvation = -3162.120781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.97460 -41.12341 -39.49806 -38.19613 -35.27823 -33.91637 -31.07678 -29.38402 -26.48136 -26.30579 -24.95694 -22.68981 -21.63119 -20.69253 -19.74404 -18.77002 -18.06882 -17.41863 -17.05966 -16.92425 -16.56710 -15.87599 -15.74588 -15.62525 -15.01989 -14.73166 -14.64010 -13.89924 -13.53963 -13.32393 -13.22280 -13.02444 -12.84662 -12.66940 -12.35519 -12.13032 -12.01940 -11.44704 -11.26828 -10.90053 -10.22837 -9.88491 -9.47810 -9.02549 -7.97273 -5.31467 -0.71110 0.28002 0.76170 1.15202 1.45281 1.48359 1.57774 1.93024 1.98172 2.47806 3.25840 3.26374 3.38763 3.67445 3.73135 3.94308 4.23589 4.38608 4.44769 4.71068 4.73050 4.84707 4.87229 5.02893 5.13500 5.21440 5.40837 5.58788 5.83023 6.38693 6.83296 7.05915 7.53653 8.51512 9.21906 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.003929 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.761425 B = 7125.444795 C = 7408.744620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.985 3.015 4 H -0.282 1.282 5 H -0.264 1.264 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.094 0.906 9 N -0.635 5.635 10 C 0.151 3.849 11 C 0.113 3.887 12 N -0.693 5.693 13 C 0.585 3.415 14 O -0.577 6.577 15 C -0.359 4.359 16 S 0.319 5.681 17 C -0.181 4.181 18 C -0.190 4.190 19 C 0.142 3.858 20 F -0.129 7.129 21 C 0.121 3.879 22 H 0.250 0.750 23 H 0.031 0.969 24 H 0.020 0.980 25 H 0.100 0.900 26 H 0.412 0.588 27 H 0.226 0.774 28 H 0.181 0.819 29 H 0.065 0.935 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -22.786 4.201 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.812 3.188 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.223 1.223 7 C -0.361 4.361 8 H 0.112 0.888 9 N -0.361 5.361 10 C 0.023 3.977 11 C 0.007 3.993 12 N -0.344 5.344 13 C 0.373 3.627 14 O -0.458 6.458 15 C -0.480 4.480 16 S 0.586 5.414 17 C -0.319 4.319 18 C -0.221 4.221 19 C 0.106 3.894 20 F -0.107 7.107 21 C -0.005 4.005 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.118 0.882 26 H 0.249 0.751 27 H 0.242 0.758 28 H 0.199 0.801 29 H 0.083 0.917 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.898 -21.777 4.814 22.834 hybrid contribution -0.588 0.914 -1.517 1.867 sum -5.487 -20.862 3.297 21.822 Atomic orbital electron populations 1.70051 1.06832 1.25963 1.57497 1.25777 0.96536 1.01398 1.02318 0.84969 0.77826 0.78472 0.77486 1.20860 1.18810 1.22295 1.19383 0.91241 0.82352 1.43109 0.88798 1.45628 1.06407 1.00930 1.83176 1.22404 0.88285 0.90992 0.95969 1.23074 0.93146 0.83233 0.99836 1.45548 1.48644 1.28238 1.11928 1.17198 0.78547 0.82171 0.84775 1.90849 1.65011 1.67997 1.21971 1.24632 1.14290 1.06141 1.02921 1.82910 1.40829 1.16458 1.01230 1.25705 1.02524 1.04971 0.98733 1.19994 1.06346 0.99415 0.96314 1.17584 0.97652 0.95677 0.78526 1.91511 1.94065 1.92630 1.32539 1.22817 0.96503 0.84072 0.97079 0.94147 0.95120 0.96096 0.88241 0.75121 0.75776 0.80131 0.91702 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.44 11.81 21.65 0.26 -59.18 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.99 46.12 29.56 68.60 2.03 48.15 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 7 C -0.23 -13.19 10.73 84.04 0.90 -12.29 16 8 H 0.09 4.97 7.84 -2.91 -0.02 4.95 16 9 N -0.63 -33.10 3.76 -738.02 -2.78 -35.88 16 10 C 0.15 7.51 7.05 83.27 0.59 8.10 16 11 C 0.11 4.55 4.62 45.55 0.21 4.76 16 12 N -0.69 -22.12 5.39 -445.84 -2.40 -24.52 16 13 C 0.58 20.57 7.77 86.34 0.67 21.24 16 14 O -0.58 -26.09 15.73 -4.47 -0.07 -26.16 16 15 C -0.36 -9.39 6.45 24.06 0.16 -9.23 16 16 S 0.32 4.30 22.14 -56.49 -1.25 3.05 16 17 C -0.18 -1.66 10.91 66.80 0.73 -0.94 16 18 C -0.19 -2.85 10.15 21.12 0.21 -2.63 16 19 C 0.14 3.62 7.48 21.84 0.16 3.78 16 20 F -0.13 -4.18 16.42 44.97 0.74 -3.44 16 21 C 0.12 4.71 8.44 83.18 0.70 5.41 16 22 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 23 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.02 1.20 7.57 -2.39 -0.02 1.18 16 25 H 0.10 4.44 7.45 -2.38 -0.02 4.42 16 26 H 0.41 10.02 7.86 -92.71 -0.73 9.29 16 27 H 0.23 0.04 8.06 -2.91 -0.02 0.02 16 28 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.19 8.13 -2.38 -0.02 2.18 16 Total: -1.00 -79.44 284.81 1.78 -77.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.46 Total: 5.54 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 4.80 Total: 14.78 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -4.92 Total: -119.58 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.07 Total: -26.16 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.74 Total: -3.44 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.25 Total: 3.05 kcal Total: -79.44 1.78 -77.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030280611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.597 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds