Wall clock time and date at job start Mon Mar 30 2020 00:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47134 * 274.99105 * 3 2 1 5 5 H 1.48499 * 109.46836 * 34.98590 * 3 2 1 6 6 H 1.48498 * 109.47044 * 154.98899 * 3 2 1 7 7 C 1.38812 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00400 * 185.06155 * 7 2 1 9 9 N 1.36944 * 119.99519 * 5.06003 * 7 2 1 10 10 C 1.47584 * 134.48874 * 173.48027 * 9 7 2 11 11 C 1.53940 * 86.11406 * 155.35816 * 10 9 7 12 12 N 1.46505 * 113.74048 * 137.94884 * 11 10 9 13 13 C 1.34774 * 119.99930 * 156.92382 * 12 11 10 14 14 O 1.21711 * 120.00380 * 0.02562 * 13 12 11 15 15 C 1.46499 * 119.99633 * 179.72901 * 13 12 11 16 16 O 1.34980 * 126.01300 * 0.30183 * 15 13 12 17 17 C 1.33934 * 109.40566 * 179.97438 * 16 15 13 18 18 C 1.35080 * 108.82391 * 359.97438 * 17 16 15 19 19 C 1.36712 * 126.00469 * 179.97438 * 15 13 12 20 20 Cl 1.73603 * 126.66765 * 0.02562 * 19 15 13 21 21 C 1.47808 * 134.45746 * 353.35214 * 9 7 2 22 22 H 0.96994 * 119.99938 * 0.02562 * 1 2 3 23 23 H 1.09001 * 113.76728 * 41.05882 * 10 9 7 24 24 H 1.08995 * 113.77165 * 269.66312 * 10 9 7 25 25 H 1.08992 * 113.74857 * 269.15437 * 11 10 9 26 26 H 0.97005 * 119.99820 * 336.93277 * 12 11 10 27 27 H 1.08008 * 125.58970 * 179.97438 * 17 16 15 28 28 H 1.07997 * 126.43507 * 179.97438 * 18 17 16 29 29 H 1.09000 * 113.76854 * 90.38319 * 21 9 7 30 30 H 1.08995 * 113.83940 * 318.91320 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3296 -2.3857 -0.1057 10 6 1.7288 -3.7983 -0.2583 11 6 0.3712 -4.1420 0.3810 12 7 -0.3173 -5.2631 -0.2635 13 6 -1.2386 -5.9707 0.4198 14 8 -1.4991 -5.6780 1.5721 15 6 -1.9314 -7.0880 -0.2266 16 8 -1.7387 -7.5158 -1.4923 17 6 -2.5443 -8.5573 -1.7375 18 6 -3.2704 -8.8173 -0.6285 19 6 -2.8821 -7.8848 0.3481 20 17 -3.4933 -7.7655 1.9685 21 6 -0.1001 -2.7609 -0.1095 22 1 -0.4850 0.8400 -0.0004 23 1 2.5861 -4.0810 0.3526 24 1 1.8197 -4.1195 -1.2958 25 1 0.4077 -4.2332 1.4665 26 1 -0.1099 -5.4963 -1.1820 27 1 -2.6037 -9.1004 -2.6692 28 1 -4.0084 -9.5973 -0.5133 29 1 -0.5475 -2.7768 -1.1033 30 1 -0.7002 -2.2169 0.6199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030903801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:43 Heat of formation + Delta-G solvation = 37.262790 kcal Electronic energy + Delta-G solvation = -17815.421152 eV Core-core repulsion = 14640.805800 eV Total energy + Delta-G solvation = -3174.615352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.96166 -39.44299 -37.54722 -36.69459 -33.73826 -33.00536 -31.88950 -30.11306 -27.45952 -24.87055 -24.21000 -22.50490 -22.00085 -20.42337 -19.73906 -18.41034 -16.81383 -16.64982 -16.54431 -15.84033 -14.96302 -14.36135 -14.25021 -13.97540 -13.88238 -13.68260 -13.26500 -12.71731 -12.40677 -11.94391 -11.51202 -11.49196 -11.06574 -10.89343 -10.82532 -10.51054 -10.10715 -9.90600 -9.85616 -9.56264 -8.94436 -8.82523 -8.49692 -6.93844 -5.80954 -3.14329 0.79991 1.86911 1.96211 2.60126 3.20842 3.32444 3.39242 3.44549 3.46301 4.39532 4.44996 4.62887 4.91097 5.09602 5.31037 5.41849 5.43796 5.53954 5.78864 5.96055 6.15397 6.35478 6.44657 6.50516 6.65376 7.20731 7.29488 7.51962 7.72471 7.93196 8.29204 9.00091 9.66491 10.52970 11.36423 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038463 B = 0.003909 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.804188 B = 7160.624558 C = 7501.067076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.090 3.910 12 N -0.700 5.700 13 C 0.592 3.408 14 O -0.504 6.504 15 C -0.050 4.050 16 O -0.151 6.151 17 C 0.001 3.999 18 C -0.214 4.214 19 C -0.059 4.059 20 Cl -0.006 7.006 21 C 0.157 3.843 22 H 0.255 0.745 23 H 0.051 0.949 24 H 0.037 0.963 25 H 0.115 0.885 26 H 0.401 0.599 27 H 0.217 0.783 28 H 0.164 0.836 29 H 0.032 0.968 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -19.362 -3.860 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.015 4.015 12 N -0.350 5.350 13 C 0.376 3.624 14 O -0.380 6.380 15 C -0.104 4.104 16 O -0.045 6.045 17 C -0.069 4.069 18 C -0.234 4.234 19 C -0.089 4.089 20 Cl 0.023 6.977 21 C 0.031 3.969 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.132 0.868 26 H 0.236 0.764 27 H 0.234 0.766 28 H 0.182 0.818 29 H 0.050 0.950 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.834 -18.593 -3.030 19.721 hybrid contribution 0.217 0.582 -0.539 0.822 sum -5.617 -18.011 -3.569 19.201 Atomic orbital electron populations 1.69842 1.05122 1.25607 1.55666 1.24854 0.95680 0.97678 1.01910 0.86094 0.78755 0.83368 0.77515 1.21558 1.21606 1.20440 1.18992 0.90758 0.81634 1.44163 0.89937 1.45697 1.02351 1.00552 1.84700 1.22870 0.94500 0.86773 0.97226 1.24088 0.93504 0.84973 0.98916 1.46082 1.39766 1.32630 1.16549 1.16489 0.80062 0.80167 0.85688 1.90942 1.64097 1.67295 1.15705 1.22236 1.03353 1.01261 0.83529 1.84189 1.52166 1.40078 1.28110 1.24314 0.92231 0.89675 1.00669 1.21653 1.05769 1.03416 0.92563 1.21277 0.98926 0.98429 0.90244 1.98391 1.85676 1.97422 1.16213 1.22666 0.88152 0.87707 0.98370 0.93460 0.93061 0.94585 0.86762 0.76419 0.76649 0.81830 0.95040 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 11.51 55.49 0.64 -26.80 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 22.10 29.56 -169.99 -5.02 17.08 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.52 3.70 -177.91 -0.66 -16.18 16 10 C 0.11 2.24 8.69 -2.97 -0.03 2.22 16 11 C 0.09 1.73 4.40 -70.15 -0.31 1.43 16 12 N -0.70 -11.18 5.37 -56.72 -0.30 -11.48 16 13 C 0.59 9.89 7.78 -12.93 -0.10 9.79 16 14 O -0.50 -9.98 15.16 5.18 0.08 -9.90 16 15 C -0.05 -0.69 7.13 -36.81 -0.26 -0.95 16 16 O -0.15 -1.66 10.40 4.80 0.05 -1.61 16 17 C 0.00 0.01 12.07 29.61 0.36 0.36 16 18 C -0.21 -1.95 10.88 -39.85 -0.43 -2.38 16 19 C -0.06 -0.76 6.76 -39.28 -0.27 -1.02 16 20 Cl -0.01 -0.08 27.84 -51.86 -1.44 -1.53 16 21 C 0.16 3.76 7.24 -2.84 -0.02 3.74 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 25 H 0.11 2.36 7.50 -51.93 -0.39 1.97 16 26 H 0.40 5.38 8.47 -40.82 -0.35 5.04 16 27 H 0.22 0.61 8.06 -52.48 -0.42 0.19 16 28 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 2.02 7.37 -51.93 -0.38 1.64 16 LS Contribution 285.98 15.07 4.31 4.31 Total: -1.00 -33.19 285.98 -6.45 -39.64 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.78 Total: 0.06 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.32 Total: 6.42 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.32 Total: -54.46 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.13 Total: -11.52 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.44 Total: -1.53 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.19 -6.45 -39.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030903801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.902 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds