Wall clock time and date at job start Mon Mar 30 2020 00:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47134 * 274.99105 * 3 2 1 5 5 H 1.48499 * 109.46836 * 34.98590 * 3 2 1 6 6 H 1.48498 * 109.47044 * 154.98899 * 3 2 1 7 7 C 1.38812 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00400 * 185.06155 * 7 2 1 9 9 N 1.36944 * 119.99519 * 5.06003 * 7 2 1 10 10 C 1.47584 * 134.48874 * 173.48027 * 9 7 2 11 11 C 1.53940 * 86.11406 * 155.35816 * 10 9 7 12 12 N 1.46505 * 113.74048 * 137.94884 * 11 10 9 13 13 C 1.34774 * 119.99930 * 156.92382 * 12 11 10 14 14 O 1.21711 * 120.00380 * 0.02562 * 13 12 11 15 15 C 1.46499 * 119.99633 * 179.72901 * 13 12 11 16 16 O 1.34980 * 126.01300 * 0.30183 * 15 13 12 17 17 C 1.33934 * 109.40566 * 179.97438 * 16 15 13 18 18 C 1.35080 * 108.82391 * 359.97438 * 17 16 15 19 19 C 1.36712 * 126.00469 * 179.97438 * 15 13 12 20 20 Cl 1.73603 * 126.66765 * 0.02562 * 19 15 13 21 21 C 1.47808 * 134.45746 * 353.35214 * 9 7 2 22 22 H 0.96994 * 119.99938 * 0.02562 * 1 2 3 23 23 H 1.09001 * 113.76728 * 41.05882 * 10 9 7 24 24 H 1.08995 * 113.77165 * 269.66312 * 10 9 7 25 25 H 1.08992 * 113.74857 * 269.15437 * 11 10 9 26 26 H 0.97005 * 119.99820 * 336.93277 * 12 11 10 27 27 H 1.08008 * 125.58970 * 179.97438 * 17 16 15 28 28 H 1.07997 * 126.43507 * 179.97438 * 18 17 16 29 29 H 1.09000 * 113.76854 * 90.38319 * 21 9 7 30 30 H 1.08995 * 113.83940 * 318.91320 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3296 -2.3857 -0.1057 10 6 1.7288 -3.7983 -0.2583 11 6 0.3712 -4.1420 0.3810 12 7 -0.3173 -5.2631 -0.2635 13 6 -1.2386 -5.9707 0.4198 14 8 -1.4991 -5.6780 1.5721 15 6 -1.9314 -7.0880 -0.2266 16 8 -1.7387 -7.5158 -1.4923 17 6 -2.5443 -8.5573 -1.7375 18 6 -3.2704 -8.8173 -0.6285 19 6 -2.8821 -7.8848 0.3481 20 17 -3.4933 -7.7655 1.9685 21 6 -0.1001 -2.7609 -0.1095 22 1 -0.4850 0.8400 -0.0004 23 1 2.5861 -4.0810 0.3526 24 1 1.8197 -4.1195 -1.2958 25 1 0.4077 -4.2332 1.4665 26 1 -0.1099 -5.4963 -1.1820 27 1 -2.6037 -9.1004 -2.6692 28 1 -4.0084 -9.5973 -0.5133 29 1 -0.5475 -2.7768 -1.1033 30 1 -0.7002 -2.2169 0.6199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030903801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:43 Heat of formation + Delta-G solvation = 13.093659 kcal Electronic energy + Delta-G solvation = -17816.469204 eV Core-core repulsion = 14640.805800 eV Total energy + Delta-G solvation = -3175.663404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.80207 -40.89683 -39.18763 -37.71642 -35.27140 -34.00653 -33.71756 -31.13262 -29.33765 -26.65317 -25.70887 -23.89399 -22.89941 -21.56751 -21.38052 -19.54628 -18.77979 -17.62204 -17.54905 -17.25695 -16.92155 -15.80743 -15.65575 -15.49042 -14.98501 -14.66922 -14.55589 -13.95946 -13.67734 -13.43367 -13.34823 -13.24690 -12.83188 -12.66072 -12.33260 -12.13420 -11.94715 -11.54182 -11.23061 -10.89740 -10.72391 -10.16757 -9.69825 -8.98177 -7.94330 -5.29158 -0.17602 0.90524 1.23478 1.46075 1.48258 1.57630 1.65695 1.97553 2.16119 2.49486 3.22300 3.37460 3.62643 3.71228 3.79986 4.20060 4.25380 4.44016 4.48896 4.73951 4.76884 4.88911 5.04352 5.15971 5.20453 5.46668 5.56719 5.68870 5.87039 6.43732 6.86618 7.02464 7.56708 8.49613 9.23414 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038463 B = 0.003909 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.804188 B = 7160.624558 C = 7501.067076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.123 3.877 11 C 0.119 3.881 12 N -0.690 5.690 13 C 0.592 3.408 14 O -0.545 6.545 15 C -0.087 4.087 16 O -0.152 6.152 17 C 0.038 3.962 18 C -0.225 4.225 19 C -0.062 4.062 20 Cl -0.023 7.023 21 C 0.155 3.845 22 H 0.249 0.751 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.417 0.583 27 H 0.273 0.727 28 H 0.193 0.807 29 H 0.026 0.974 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 -21.567 -5.742 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.366 4.366 8 H 0.110 0.890 9 N -0.365 5.365 10 C -0.002 4.002 11 C 0.014 3.986 12 N -0.341 5.341 13 C 0.379 3.621 14 O -0.425 6.425 15 C -0.140 4.140 16 O -0.047 6.047 17 C -0.031 4.031 18 C -0.244 4.244 19 C -0.092 4.092 20 Cl 0.006 6.994 21 C 0.029 3.971 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.254 0.746 27 H 0.288 0.712 28 H 0.210 0.790 29 H 0.044 0.956 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.164 -20.852 -4.942 22.043 hybrid contribution -0.047 1.079 -0.033 1.081 sum -5.211 -19.773 -4.975 21.045 Atomic orbital electron populations 1.70047 1.06770 1.25839 1.57642 1.25739 0.96512 1.01239 1.02485 0.85009 0.77928 0.78751 0.77342 1.21204 1.22335 1.18752 1.19452 0.91461 0.82888 1.42751 0.89026 1.46018 1.03219 1.02144 1.85126 1.23009 0.94914 0.83297 0.98965 1.23347 0.93179 0.83972 0.98144 1.45774 1.39639 1.31567 1.17146 1.16794 0.79496 0.80547 0.85309 1.90914 1.65286 1.68747 1.17543 1.21488 1.05246 1.02061 0.85246 1.84189 1.52911 1.41133 1.26479 1.25479 0.88870 0.87063 1.01708 1.22044 1.07001 1.03607 0.91772 1.21709 0.98452 0.98994 0.90017 1.98385 1.85748 1.97506 1.17737 1.22537 0.87416 0.90161 0.97022 0.94191 0.91303 0.91626 0.88208 0.74631 0.71179 0.78991 0.95583 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 11.51 21.65 0.25 -58.93 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16 8 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 9 N -0.64 -32.89 3.70 -716.77 -2.65 -35.54 16 10 C 0.12 4.72 8.69 86.48 0.75 5.47 16 11 C 0.12 4.66 4.40 46.75 0.21 4.86 16 12 N -0.69 -21.70 5.37 -451.56 -2.42 -24.13 16 13 C 0.59 19.87 7.78 86.40 0.67 20.54 16 14 O -0.55 -22.35 15.16 -4.38 -0.07 -22.41 16 15 C -0.09 -2.31 7.13 24.07 0.17 -2.14 16 16 O -0.15 -2.89 10.40 -5.75 -0.06 -2.95 16 17 C 0.04 0.40 12.07 67.09 0.81 1.21 16 18 C -0.23 -3.28 10.88 22.09 0.24 -3.04 16 19 C -0.06 -1.50 6.76 22.46 0.15 -1.35 16 20 Cl -0.02 -0.62 27.84 -2.72 -0.08 -0.70 16 21 C 0.16 7.69 7.24 86.44 0.63 8.32 16 22 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 23 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 25 H 0.10 4.24 7.50 -2.39 -0.02 4.22 16 26 H 0.42 10.50 8.47 -92.70 -0.78 9.72 16 27 H 0.27 -0.39 8.06 -2.91 -0.02 -0.42 16 28 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.81 7.37 -2.39 -0.02 1.79 16 Total: -1.00 -75.73 285.98 2.39 -73.34 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.40 Total: 5.27 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 4.99 Total: 18.03 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.83 Total: -118.60 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.13 Total: -25.36 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -75.73 2.39 -73.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030903801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.433 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds