Wall clock time and date at job start Mon Mar 30 2020 00:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48495 * 109.47206 * 239.99743 * 3 2 1 5 5 H 1.48502 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46852 * 119.99823 * 3 2 1 7 7 C 1.38814 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00466 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.48966 * 180.02562 * 9 7 2 11 11 C 1.53948 * 86.11239 * 155.36343 * 10 9 7 12 12 N 1.46505 * 113.74255 * 137.95280 * 11 10 9 13 13 C 1.34776 * 120.00287 * 156.91927 * 12 11 10 14 14 O 1.21732 * 119.99968 * 0.02562 * 13 12 11 15 15 C 1.46344 * 119.99920 * 179.97438 * 13 12 11 16 16 C 1.36733 * 125.43434 * 180.02562 * 15 13 12 17 17 C 1.37343 * 113.32999 * 180.02562 * 16 15 13 18 18 C 1.34201 * 115.04843 * 359.97438 * 17 16 15 19 19 F 1.35095 * 124.54501 * 180.02562 * 18 17 16 20 20 S 1.70618 * 110.91893 * 359.97438 * 18 17 16 21 21 C 1.47816 * 134.45757 * 359.87505 * 9 7 2 22 22 H 0.96997 * 119.99918 * 0.02562 * 1 2 3 23 23 H 1.08993 * 113.76857 * 41.06319 * 10 9 7 24 24 H 1.09000 * 113.76784 * 269.66328 * 10 9 7 25 25 H 1.09000 * 113.74284 * 269.15167 * 11 10 9 26 26 H 0.97005 * 119.99836 * 336.92735 * 12 11 10 27 27 H 1.07998 * 123.33622 * 0.04553 * 16 15 13 28 28 H 1.08005 * 122.47796 * 180.02562 * 17 16 15 29 29 H 1.08998 * 113.76646 * 90.37266 * 21 9 7 30 30 H 1.08996 * 113.83199 * 318.91068 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3469 -4.0829 0.6397 12 7 -0.3335 -5.2613 0.0968 13 6 -1.2734 -5.8931 0.8274 14 8 -1.5574 -5.4843 1.9384 15 6 -1.9535 -7.0699 0.2848 16 6 -2.9204 -7.7928 0.9265 17 6 -3.3893 -8.8509 0.1870 18 6 -2.8263 -8.9922 -1.0230 19 9 -3.1427 -9.9640 -1.9065 20 16 -1.6582 -7.7790 -1.2968 21 6 -0.1059 -2.7571 0.0022 22 1 -0.4850 0.8400 -0.0004 23 1 2.5623 -4.0324 0.6547 24 1 1.8319 -4.2351 -0.9981 25 1 0.3592 -4.0639 1.7295 26 1 -0.1074 -5.5869 -0.7885 27 1 -3.2802 -7.5553 1.9168 28 1 -4.1551 -9.5194 0.5518 29 1 -0.5319 -2.8717 -0.9945 30 1 -0.7184 -2.1402 0.6597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031473459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:15 Heat of formation + Delta-G solvation = 16.389587 kcal Electronic energy + Delta-G solvation = -17449.167289 eV Core-core repulsion = 14288.063303 eV Total energy + Delta-G solvation = -3161.103986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.38220 -39.76748 -38.07638 -37.12489 -33.65404 -31.90794 -29.68715 -27.46212 -25.24660 -24.88280 -23.31953 -21.50295 -20.13819 -19.58726 -18.86286 -16.88008 -16.77069 -16.57553 -16.28034 -15.53001 -15.05740 -14.75276 -14.60884 -14.22927 -13.87766 -13.41754 -12.84130 -12.52624 -12.33124 -11.93820 -11.51203 -11.50848 -11.30596 -10.90989 -10.81270 -10.52336 -10.12517 -9.86220 -9.57751 -9.07172 -8.99898 -8.83930 -8.54542 -6.96313 -5.80256 -3.14724 0.09833 0.70945 1.34626 2.00033 3.22380 3.28006 3.39284 3.43238 3.44468 4.00102 4.42514 4.75831 4.98703 5.01488 5.10486 5.43854 5.50133 5.52177 5.72514 5.90893 5.96228 6.13986 6.32995 6.48759 6.62659 7.18757 7.28139 7.50138 7.68956 7.92815 8.30898 8.99428 9.65950 10.51349 11.36399 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.003625 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.851776 B = 7722.385102 C = 7899.543424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.709 5.709 13 C 0.587 3.413 14 O -0.525 6.525 15 C -0.248 4.248 16 C -0.043 4.043 17 C -0.179 4.179 18 C -0.029 4.029 19 F -0.101 7.101 20 S 0.225 5.775 21 C 0.154 3.846 22 H 0.256 0.744 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.115 0.885 26 H 0.393 0.607 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.030 0.970 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 -18.636 -2.478 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.359 5.359 13 C 0.372 3.628 14 O -0.403 6.403 15 C -0.369 4.369 16 C -0.075 4.075 17 C -0.212 4.212 18 C -0.167 4.167 19 F -0.080 7.080 20 S 0.489 5.511 21 C 0.028 3.972 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.133 0.867 26 H 0.227 0.773 27 H 0.182 0.818 28 H 0.175 0.825 29 H 0.047 0.953 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.182 -17.647 -2.925 18.370 hybrid contribution -0.601 0.035 0.270 0.660 sum -4.783 -17.612 -2.655 18.442 Atomic orbital electron populations 1.69812 1.05071 1.25695 1.55881 1.24820 0.95691 0.97664 1.01993 0.86162 0.78465 0.82909 0.77968 1.21120 1.21489 1.20943 1.18939 0.90243 0.81562 1.44828 0.90029 1.45696 1.02340 0.99129 1.86097 1.22875 0.94500 0.86931 0.97113 1.24039 0.93446 0.83686 1.00147 1.46083 1.39428 1.31013 1.19345 1.16804 0.79626 0.81271 0.85146 1.90861 1.64256 1.65867 1.19314 1.24760 1.08083 1.04928 0.99165 1.20501 0.93738 0.92096 1.01151 1.20292 1.05114 1.02212 0.93614 1.21953 1.05994 0.95792 0.92983 1.91529 1.91452 1.58896 1.66146 1.83474 1.34360 1.18784 1.14469 1.22724 0.88249 0.88941 0.97320 0.93417 0.93011 0.94671 0.86745 0.77292 0.81770 0.82534 0.95250 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.35 3.70 -177.91 -0.66 -16.01 16 10 C 0.11 2.20 8.69 -2.96 -0.03 2.17 16 11 C 0.09 1.74 4.40 -70.16 -0.31 1.43 16 12 N -0.71 -10.89 5.37 -56.77 -0.30 -11.19 16 13 C 0.59 9.25 7.77 -13.00 -0.10 9.15 16 14 O -0.52 -10.18 16.46 5.16 0.08 -10.10 16 15 C -0.25 -3.04 6.44 -36.87 -0.24 -3.28 16 16 C -0.04 -0.46 10.00 -40.45 -0.40 -0.86 16 17 C -0.18 -1.65 10.16 -41.33 -0.42 -2.07 16 18 C -0.03 -0.29 8.10 29.31 0.24 -0.05 16 19 F -0.10 -1.03 17.32 2.25 0.04 -0.99 16 20 S 0.22 2.17 22.15 -107.50 -2.38 -0.21 16 21 C 0.15 3.64 7.32 -2.85 -0.02 3.62 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 25 H 0.11 2.35 7.50 -51.93 -0.39 1.96 16 26 H 0.39 4.98 7.82 -40.82 -0.32 4.66 16 27 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.16 1.08 8.06 -52.48 -0.42 0.65 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 2.12 7.17 -51.93 -0.37 1.75 16 LS Contribution 285.49 15.07 4.30 4.30 Total: -1.00 -32.07 285.49 -7.59 -39.66 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -2.74 Total: 0.85 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.54 Total: 3.37 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.33 Total: -53.83 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.38 Total: -0.21 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.07 -7.59 -39.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031473459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.049 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds