Wall clock time and date at job start Mon Mar 30 2020 00:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48495 * 109.47206 * 239.99743 * 3 2 1 5 5 H 1.48502 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46852 * 119.99823 * 3 2 1 7 7 C 1.38814 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00466 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.48966 * 180.02562 * 9 7 2 11 11 C 1.53948 * 86.11239 * 155.36343 * 10 9 7 12 12 N 1.46505 * 113.74255 * 137.95280 * 11 10 9 13 13 C 1.34776 * 120.00287 * 156.91927 * 12 11 10 14 14 O 1.21732 * 119.99968 * 0.02562 * 13 12 11 15 15 C 1.46344 * 119.99920 * 179.97438 * 13 12 11 16 16 C 1.36733 * 125.43434 * 180.02562 * 15 13 12 17 17 C 1.37343 * 113.32999 * 180.02562 * 16 15 13 18 18 C 1.34201 * 115.04843 * 359.97438 * 17 16 15 19 19 F 1.35095 * 124.54501 * 180.02562 * 18 17 16 20 20 S 1.70618 * 110.91893 * 359.97438 * 18 17 16 21 21 C 1.47816 * 134.45757 * 359.87505 * 9 7 2 22 22 H 0.96997 * 119.99918 * 0.02562 * 1 2 3 23 23 H 1.08993 * 113.76857 * 41.06319 * 10 9 7 24 24 H 1.09000 * 113.76784 * 269.66328 * 10 9 7 25 25 H 1.09000 * 113.74284 * 269.15167 * 11 10 9 26 26 H 0.97005 * 119.99836 * 336.92735 * 12 11 10 27 27 H 1.07998 * 123.33622 * 0.04553 * 16 15 13 28 28 H 1.08005 * 122.47796 * 180.02562 * 17 16 15 29 29 H 1.08998 * 113.76646 * 90.37266 * 21 9 7 30 30 H 1.08996 * 113.83199 * 318.91068 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3469 -4.0829 0.6397 12 7 -0.3335 -5.2613 0.0968 13 6 -1.2734 -5.8931 0.8274 14 8 -1.5574 -5.4843 1.9384 15 6 -1.9535 -7.0699 0.2848 16 6 -2.9204 -7.7928 0.9265 17 6 -3.3893 -8.8509 0.1870 18 6 -2.8263 -8.9922 -1.0230 19 9 -3.1427 -9.9640 -1.9065 20 16 -1.6582 -7.7790 -1.2968 21 6 -0.1059 -2.7571 0.0022 22 1 -0.4850 0.8400 -0.0004 23 1 2.5623 -4.0324 0.6547 24 1 1.8319 -4.2351 -0.9981 25 1 0.3592 -4.0639 1.7295 26 1 -0.1074 -5.5869 -0.7885 27 1 -3.2802 -7.5553 1.9168 28 1 -4.1551 -9.5194 0.5518 29 1 -0.5319 -2.8717 -0.9945 30 1 -0.7184 -2.1402 0.6597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031473459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:15 Heat of formation + Delta-G solvation = -5.564973 kcal Electronic energy + Delta-G solvation = -17450.119310 eV Core-core repulsion = 14288.063303 eV Total energy + Delta-G solvation = -3162.056008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.17932 -41.11360 -39.46391 -38.27605 -35.23260 -33.82239 -30.75483 -29.25959 -26.64355 -26.30604 -24.88184 -22.77379 -21.52295 -20.72206 -19.97753 -18.78375 -17.81159 -17.74485 -17.09041 -16.95537 -16.75436 -16.02389 -15.72941 -15.56692 -15.42592 -14.63856 -14.35111 -13.66348 -13.53583 -13.29710 -13.21914 -13.11953 -12.79662 -12.63744 -12.33833 -12.11165 -11.96346 -11.54173 -11.23388 -10.87666 -10.16828 -9.79895 -9.77256 -8.97979 -7.91671 -5.27279 -0.78235 -0.09714 0.50851 1.14428 1.46851 1.50790 1.56938 1.99155 2.07280 2.49809 3.21135 3.24674 3.38287 3.71896 3.80947 4.15613 4.27562 4.31022 4.48135 4.73513 4.75102 4.88820 4.94348 5.06637 5.14117 5.22436 5.47950 5.63069 5.88860 6.41458 6.87998 7.07151 7.58316 8.50379 9.24958 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.003625 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.851776 B = 7722.385102 C = 7899.543424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.983 3.017 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.638 5.638 10 C 0.122 3.878 11 C 0.120 3.880 12 N -0.700 5.700 13 C 0.589 3.411 14 O -0.569 6.569 15 C -0.282 4.282 16 C -0.032 4.032 17 C -0.176 4.176 18 C -0.030 4.030 19 F -0.101 7.101 20 S 0.268 5.732 21 C 0.151 3.849 22 H 0.249 0.751 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.409 0.591 27 H 0.168 0.832 28 H 0.183 0.817 29 H 0.027 0.973 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -20.493 -3.375 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.811 3.189 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.109 0.891 9 N -0.365 5.365 10 C -0.003 4.003 11 C 0.014 3.986 12 N -0.350 5.350 13 C 0.377 3.623 14 O -0.450 6.450 15 C -0.403 4.403 16 C -0.065 4.065 17 C -0.208 4.208 18 C -0.168 4.168 19 F -0.080 7.080 20 S 0.534 5.466 21 C 0.024 3.976 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.246 0.754 27 H 0.186 0.814 28 H 0.200 0.800 29 H 0.045 0.955 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.496 -19.568 -3.864 20.250 hybrid contribution -0.849 0.462 0.511 1.093 sum -4.345 -19.106 -3.353 19.878 Atomic orbital electron populations 1.70025 1.06671 1.25833 1.57798 1.25707 0.96531 1.01186 1.02598 0.85089 0.77073 0.78357 0.78412 1.19967 1.22255 1.20074 1.19407 0.91022 0.82849 1.43307 0.89085 1.46021 1.03249 1.00819 1.86413 1.23028 0.94876 0.83601 0.98825 1.23297 0.93207 0.83125 0.98959 1.45790 1.39329 1.29829 1.20096 1.17187 0.78935 0.81737 0.84464 1.90837 1.65490 1.67393 1.21273 1.24386 1.09598 1.04860 1.01485 1.20681 0.92692 0.91784 1.01310 1.20460 1.05370 1.01914 0.93068 1.22131 1.05890 0.95635 0.93165 1.91540 1.91424 1.58862 1.66140 1.83285 1.33632 1.17819 1.11910 1.22611 0.87455 0.90904 0.96605 0.94239 0.91311 0.91582 0.88285 0.75409 0.81449 0.79957 0.95531 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.52 11.39 21.65 0.25 -58.28 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.24 -13.24 10.70 84.03 0.90 -12.34 16 8 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 9 N -0.64 -32.39 3.70 -716.79 -2.66 -35.04 16 10 C 0.12 4.56 8.69 86.49 0.75 5.31 16 11 C 0.12 4.57 4.40 46.74 0.21 4.77 16 12 N -0.70 -20.84 5.37 -451.72 -2.42 -23.26 16 13 C 0.59 18.33 7.77 86.35 0.67 19.00 16 14 O -0.57 -22.44 16.46 -4.45 -0.07 -22.52 16 15 C -0.28 -6.50 6.44 24.03 0.15 -6.35 16 16 C -0.03 -0.62 10.00 21.71 0.22 -0.40 16 17 C -0.18 -2.73 10.16 21.14 0.21 -2.52 16 18 C -0.03 -0.51 8.10 66.90 0.54 0.04 16 19 F -0.10 -1.76 17.32 44.97 0.78 -0.98 16 20 S 0.27 4.50 22.15 -56.49 -1.25 3.25 16 21 C 0.15 7.32 7.32 86.43 0.63 7.96 16 22 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 23 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 25 H 0.10 4.14 7.50 -2.39 -0.02 4.12 16 26 H 0.41 9.56 7.82 -92.70 -0.72 8.83 16 27 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 2.03 7.17 -2.39 -0.02 2.01 16 Total: -1.00 -70.68 285.49 1.87 -68.82 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.46 Total: 8.27 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.76 Total: 12.10 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -4.83 Total: -116.58 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.52 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.78 Total: -0.98 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.25 Total: 3.25 kcal Total: -70.68 1.87 -68.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031473459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.252 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds