Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46987 * 120.00933 * 3 2 1 7 7 C 1.38802 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.40196 * 119.99790 * 179.72966 * 13 11 10 15 15 C 1.39815 * 125.68833 * 359.97438 * 14 13 11 16 16 C 1.37938 * 107.63321 * 179.97438 * 15 14 13 17 17 C 1.47174 * 126.42383 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00059 * 179.97438 * 17 16 15 19 19 O 1.21631 * 119.99594 * 359.97438 * 17 16 15 20 20 N 1.36687 * 107.16089 * 359.97438 * 16 15 14 21 21 H 0.96999 * 126.08690 * 179.97438 * 20 16 15 22 22 N 1.31328 * 125.68910 * 179.68948 * 14 13 11 23 23 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 25 25 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 26 26 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 27 27 H 1.08003 * 126.18523 * 359.92649 * 15 14 13 28 28 H 0.96995 * 120.00000 * 0.02562 * 18 17 16 29 29 H 0.97001 * 119.99940 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7910 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3526 -7.6560 0.0090 15 6 1.0031 -8.0217 0.0114 16 6 0.9436 -9.3998 0.0170 17 6 -0.2772 -10.2217 0.0206 18 7 -0.1844 -11.5662 0.0255 19 8 -1.3699 -9.6875 0.0192 20 7 2.2310 -9.8590 0.0174 21 1 2.5057 -10.7893 0.0211 22 7 3.0829 -8.7476 0.0082 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1835 0.0019 27 1 0.1597 -7.3471 0.0101 28 1 0.6871 -11.9922 0.0270 29 1 -0.9890 -12.1080 0.0275 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116502762.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = 8.701123 kcal Electronic energy + Delta-G solvation = -17163.802114 eV Core-core repulsion = 14022.284692 eV Total energy + Delta-G solvation = -3141.517422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.59355 -39.60898 -38.91399 -34.86400 -34.10419 -32.44933 -31.07937 -30.36901 -28.86243 -25.52014 -24.31623 -22.20707 -20.81745 -19.94066 -19.04802 -17.94802 -17.40942 -16.70885 -16.26989 -15.79362 -15.54844 -15.11347 -14.81837 -14.21240 -14.14534 -13.93873 -13.49292 -13.39853 -12.63246 -12.33612 -11.27524 -11.08238 -11.06919 -11.03292 -10.80015 -10.52856 -10.21030 -9.87386 -9.56848 -9.10594 -9.07548 -8.52913 -8.30249 -6.54372 -6.23518 -3.95410 0.85712 2.08716 2.14737 2.79401 2.90934 3.05777 3.20945 3.23545 3.27056 3.29771 3.54453 4.17484 4.41952 4.71621 4.94152 5.11836 5.28198 5.41005 5.57220 5.76933 6.02410 6.17978 6.26325 6.53624 6.74112 6.91071 7.01895 7.57594 7.64596 7.75704 8.29375 8.32986 9.21659 10.83745 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.046235 B = 0.003459 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.461622 B = 8092.793747 C = 8683.095799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.052 6.052 10 C -0.151 4.151 11 C 0.539 3.461 12 O -0.485 6.485 13 N -0.641 5.641 14 C 0.306 3.694 15 C -0.172 4.172 16 C 0.026 3.974 17 C 0.592 3.408 18 N -0.851 5.851 19 O -0.508 6.508 20 N -0.460 5.460 21 H 0.440 0.560 22 N -0.295 5.295 23 H 0.270 0.730 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.417 0.583 27 H 0.190 0.810 28 H 0.397 0.603 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -21.858 0.045 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.174 5.826 10 C -0.301 4.301 11 C 0.326 3.674 12 O -0.355 6.355 13 N -0.293 5.293 14 C 0.051 3.949 15 C -0.204 4.204 16 C -0.103 4.103 17 C 0.375 3.625 18 N -0.416 5.416 19 O -0.380 6.380 20 N -0.177 5.177 21 H 0.285 0.715 22 N -0.130 5.130 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.253 0.747 27 H 0.207 0.793 28 H 0.225 0.775 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.075 -21.888 0.042 22.469 hybrid contribution 2.102 0.591 0.002 2.184 sum 7.177 -21.297 0.043 22.474 Atomic orbital electron populations 1.70002 1.05959 1.27696 1.46501 1.24994 0.95035 0.99059 0.94424 0.86206 0.79220 0.81153 0.78815 1.19911 1.20808 1.19915 1.22817 0.94934 0.91491 1.59417 0.90790 1.85478 1.04076 0.96244 1.96781 1.23529 1.07231 0.93651 1.05714 1.20622 0.86271 0.85874 0.74683 1.90667 1.15194 1.84606 1.45050 1.43018 1.11398 1.00815 1.74041 1.19072 0.91552 0.85817 0.98506 1.22450 0.97620 0.92572 1.07732 1.21238 0.85347 0.94753 1.08929 1.17055 0.87230 0.81930 0.76285 1.43667 1.12654 1.06675 1.78649 1.90957 1.26879 1.72184 1.47947 1.46084 1.02412 1.07806 1.61377 0.71488 1.77251 1.14911 0.91548 1.29250 0.92038 0.88413 0.88416 0.74669 0.79346 0.77514 0.75683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.77 13.22 55.49 0.73 -25.04 15 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 15 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.54 -14.92 9.50 30.94 0.29 -14.63 15 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 15 9 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 15 10 C -0.15 -2.84 6.16 36.01 0.22 -2.62 15 11 C 0.54 9.65 7.82 -10.98 -0.09 9.56 15 12 O -0.49 -10.40 12.96 5.55 0.07 -10.33 15 13 N -0.64 -9.01 5.45 -11.25 -0.06 -9.07 15 14 C 0.31 4.48 8.07 -154.49 -1.25 3.23 15 15 C -0.17 -2.69 9.41 -39.10 -0.37 -3.06 15 16 C 0.03 0.32 7.12 -82.18 -0.58 -0.27 15 17 C 0.59 6.58 8.08 -12.63 -0.10 6.48 15 18 N -0.85 -4.52 8.87 30.37 0.27 -4.25 15 19 O -0.51 -8.04 17.73 5.25 0.09 -7.95 15 20 N -0.46 -4.28 7.33 33.41 0.24 -4.04 15 21 H 0.44 2.04 8.23 -182.65 -1.50 0.54 15 22 N -0.30 -3.70 12.68 31.34 0.40 -3.30 15 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 24 H 0.10 1.67 8.14 -51.91 -0.42 1.24 15 25 H 0.10 1.66 8.14 -51.92 -0.42 1.24 15 26 H 0.42 4.44 8.82 -40.82 -0.36 4.08 15 27 H 0.19 3.50 5.88 -52.48 -0.31 3.19 15 28 H 0.40 0.73 8.00 -40.82 -0.33 0.40 15 29 H 0.41 1.64 8.93 -40.82 -0.36 1.28 15 LS Contribution 283.59 15.07 4.27 4.27 Total: -1.00 -36.91 283.59 -6.43 -43.34 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.25 Total: 3.22 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.97 Total: 0.68 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 1.58 Total: -45.69 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.28 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -36.91 -6.43 -43.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116502762.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.042 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds