Wall clock time and date at job start Mon Mar 30 2020 01:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40088 * 126.04147 * 2 1 4 4 C 1.30837 * 108.20918 * 180.02562 * 3 2 1 5 5 C 1.39878 * 108.19976 * 359.78214 * 4 3 2 6 6 C 1.34949 * 126.03811 * 180.02562 * 2 1 3 7 7 S 1.76200 * 126.12359 * 359.94489 * 6 2 1 8 8 O 1.42100 * 106.40627 * 263.54165 * 7 6 2 9 9 O 1.42107 * 106.40326 * 36.45943 * 7 6 2 10 10 N 1.65608 * 107.21705 * 149.99845 * 7 6 2 11 11 C 1.36934 * 120.00005 * 269.99640 * 10 7 6 12 12 H 1.08003 * 119.99950 * 7.05093 * 11 10 7 13 13 C 1.38812 * 119.99676 * 187.03610 * 11 10 7 14 14 N 1.31610 * 120.00022 * 26.46899 * 13 11 10 15 15 Si 1.86808 * 119.99839 * 206.46176 * 13 11 10 16 16 H 1.48495 * 109.46914 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46733 * 120.00112 * 15 13 11 18 18 H 1.48500 * 109.47120 * 240.00409 * 15 13 11 19 19 C 1.46500 * 119.99548 * 90.00295 * 10 7 6 20 20 C 1.47203 * 109.47185 * 92.88577 * 19 10 7 21 21 N 6.97651 * 105.90050 * 174.34638 * 2 1 3 22 22 H 1.09001 * 109.47193 * 269.98171 * 1 2 3 23 23 H 1.09007 * 109.46612 * 29.97820 * 1 2 3 24 24 H 1.08997 * 109.46921 * 149.97426 * 1 2 3 25 25 H 1.08000 * 125.90371 * 179.97438 * 4 3 2 26 26 H 1.07997 * 126.03865 * 180.23946 * 5 4 3 27 27 H 0.97002 * 119.99949 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.46859 * 212.88210 * 19 10 7 29 29 H 1.09000 * 109.47492 * 332.88427 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6667 0.0041 6 6 2.2589 -1.0912 -0.0005 7 16 1.7191 -2.7685 0.0001 8 8 1.7432 -3.1974 1.3547 9 8 0.5519 -2.8148 -0.8091 10 7 2.8724 -3.6549 -0.7916 11 6 2.7839 -3.8399 -2.1455 12 1 2.0295 -3.3162 -2.7139 13 6 3.6640 -4.7003 -2.7874 14 7 4.2080 -5.6993 -2.1255 15 14 4.0762 -4.4402 -4.5908 16 1 3.3392 -3.2564 -5.1012 17 1 5.5366 -4.2145 -4.7372 18 1 3.6807 -5.6426 -5.3673 19 6 3.9872 -4.2412 -0.0434 20 6 3.6424 -5.6160 0.3538 21 7 3.3763 -6.6769 0.6610 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 4.4055 1.3709 -0.0011 26 1 4.4210 -1.2964 0.0086 27 1 4.8227 -6.3008 -2.5742 28 1 4.8779 -4.2570 -0.6716 29 1 4.1813 -3.6435 0.8472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116573063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:40 Heat of formation + Delta-G solvation = 60.109008 kcal Electronic energy + Delta-G solvation = -19022.036847 eV Core-core repulsion = 15882.748638 eV Total energy + Delta-G solvation = -3139.288208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.77303 -36.84803 -36.40504 -35.10352 -34.48991 -33.00634 -31.79949 -30.02220 -27.61439 -26.54571 -24.26243 -21.62042 -20.98621 -18.87125 -18.18315 -17.66437 -16.86186 -16.07447 -15.44364 -14.92090 -14.80814 -14.58920 -13.86387 -13.79079 -13.52588 -13.05161 -12.57702 -12.42056 -12.31979 -11.85090 -11.63146 -11.44150 -11.30121 -11.19296 -11.08084 -10.94863 -10.63070 -10.45000 -10.44095 -10.18082 -9.83492 -9.37017 -8.57465 -8.43297 -6.75317 -4.13191 0.95930 1.77429 2.70192 2.95001 3.04293 3.14705 3.19312 3.51250 3.97791 4.15172 4.26749 4.36890 4.65536 4.78872 5.18598 5.28207 5.33509 5.38732 5.68873 5.71729 5.73642 5.81885 6.07895 6.34704 6.71771 6.82792 7.05660 7.20113 7.76727 7.97866 8.45752 8.86082 8.88695 10.27330 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.008793 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.455870 B = 3183.575979 C = 3775.173978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.318 5.318 3 N -0.287 5.287 4 C 0.028 3.972 5 C -0.181 4.181 6 C -0.466 4.466 7 S 2.618 3.382 8 O -0.966 6.966 9 O -0.959 6.959 10 N -0.812 5.812 11 C -0.299 4.299 12 H 0.123 0.877 13 C 0.050 3.950 14 N -0.837 5.837 15 Si 0.912 3.088 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.280 1.280 19 C 0.230 3.770 20 C 0.260 3.740 21 N -0.472 5.472 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.186 0.814 26 H 0.157 0.843 27 H 0.280 0.720 28 H 0.125 0.875 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 9.097 0.948 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.101 5.101 3 N -0.111 5.111 4 C -0.157 4.157 5 C -0.212 4.212 6 C -0.668 4.668 7 S 2.705 3.295 8 O -0.954 6.954 9 O -0.948 6.948 10 N -0.642 5.642 11 C -0.437 4.437 12 H 0.140 0.860 13 C -0.160 4.160 14 N -0.476 5.476 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.206 1.206 19 C 0.101 3.899 20 C -0.059 4.059 21 N -0.153 5.153 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.133 0.867 25 H 0.203 0.797 26 H 0.174 0.826 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.685 8.301 1.900 8.543 hybrid contribution 1.524 0.475 -1.348 2.089 sum 0.839 8.776 0.552 8.833 Atomic orbital electron populations 1.22407 0.73870 1.06786 1.04056 1.48096 1.06157 1.02087 1.53749 1.77108 1.02265 1.09641 1.22080 1.23958 0.95108 0.95198 1.01391 1.21423 0.95565 0.95138 1.09068 1.35412 1.00282 1.18723 1.12389 1.06917 0.75906 0.73090 0.73559 1.93529 1.86930 1.80315 1.34623 1.93426 1.46283 1.86079 1.69016 1.53734 1.41883 1.50749 1.17844 1.19613 1.17009 1.25846 0.81269 0.85989 1.25176 0.96147 0.94057 1.00633 1.69942 1.28136 1.10804 1.38749 0.86119 0.78828 0.79086 0.82271 1.18835 1.20044 1.20557 1.18351 0.92876 0.83568 0.95152 1.28786 0.92846 0.94755 0.89516 1.80867 1.08165 1.12499 1.13741 0.90393 0.88688 0.86658 0.79697 0.82559 0.90885 0.85704 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 11.26 59.85 0.67 1.68 15 2 N -0.32 -5.68 4.01 -67.26 -0.27 -5.95 15 3 N -0.29 -4.97 12.58 30.63 0.39 -4.58 15 4 C 0.03 0.43 12.03 -17.36 -0.21 0.22 15 5 C -0.18 -2.94 10.68 -40.01 -0.43 -3.37 15 6 C -0.47 -8.63 6.90 -17.22 -0.12 -8.75 15 7 S 2.62 53.92 5.52 -107.50 -0.59 53.33 15 8 O -0.97 -21.40 17.03 -57.17 -0.97 -22.37 15 9 O -0.96 -21.34 14.67 -57.17 -0.84 -22.17 15 10 N -0.81 -17.06 2.82 -62.77 -0.18 -17.24 15 11 C -0.30 -6.71 9.37 -15.06 -0.14 -6.85 15 12 H 0.12 2.75 7.41 -52.48 -0.39 2.36 15 13 C 0.05 1.11 4.88 -17.43 -0.09 1.03 15 14 N -0.84 -19.20 9.06 55.49 0.50 -18.69 15 15 Si 0.91 17.45 29.63 -169.99 -5.04 12.41 15 16 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 17 H -0.28 -5.15 7.11 56.52 0.40 -4.75 15 18 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 19 C 0.23 4.42 5.09 -6.83 -0.03 4.39 15 20 C 0.26 5.89 13.34 -20.75 -0.28 5.61 15 21 N -0.47 -11.57 18.54 42.16 0.78 -10.79 15 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 24 H 0.12 1.75 5.82 -51.93 -0.30 1.45 15 25 H 0.19 1.98 8.06 -52.49 -0.42 1.56 15 26 H 0.16 2.10 8.06 -52.49 -0.42 1.67 15 27 H 0.28 6.13 8.31 -40.82 -0.34 5.79 15 28 H 0.13 2.27 6.45 -51.93 -0.34 1.94 15 29 H 0.09 1.37 7.69 -51.93 -0.40 0.97 15 LS Contribution 276.81 15.07 4.17 4.17 Total: -1.00 -30.61 276.81 -4.92 -35.53 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -2.25 Total: 2.40 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.62 Total: -6.04 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 1.22 Total: -57.25 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.81 Total: -44.55 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.04 Total: 12.41 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.59 Total: 53.33 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.61 -4.92 -35.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116573063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.636 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds