Wall clock time and date at job start Mon Mar 30 2020 01:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40088 * 126.04147 * 2 1 4 4 C 1.30837 * 108.20918 * 180.02562 * 3 2 1 5 5 C 1.39878 * 108.19976 * 359.78214 * 4 3 2 6 6 C 1.34949 * 126.03811 * 180.02562 * 2 1 3 7 7 S 1.76200 * 126.12359 * 359.94489 * 6 2 1 8 8 O 1.42100 * 106.40627 * 263.54165 * 7 6 2 9 9 O 1.42107 * 106.40326 * 36.45943 * 7 6 2 10 10 N 1.65608 * 107.21705 * 149.99845 * 7 6 2 11 11 C 1.36934 * 120.00005 * 269.99640 * 10 7 6 12 12 H 1.08003 * 119.99950 * 7.05093 * 11 10 7 13 13 C 1.38812 * 119.99676 * 187.03610 * 11 10 7 14 14 N 1.31610 * 120.00022 * 26.46899 * 13 11 10 15 15 Si 1.86808 * 119.99839 * 206.46176 * 13 11 10 16 16 H 1.48495 * 109.46914 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46733 * 120.00112 * 15 13 11 18 18 H 1.48500 * 109.47120 * 240.00409 * 15 13 11 19 19 C 1.46500 * 119.99548 * 90.00295 * 10 7 6 20 20 C 1.47203 * 109.47185 * 92.88577 * 19 10 7 21 21 N 6.97651 * 105.90050 * 174.34638 * 2 1 3 22 22 H 1.09001 * 109.47193 * 269.98171 * 1 2 3 23 23 H 1.09007 * 109.46612 * 29.97820 * 1 2 3 24 24 H 1.08997 * 109.46921 * 149.97426 * 1 2 3 25 25 H 1.08000 * 125.90371 * 179.97438 * 4 3 2 26 26 H 1.07997 * 126.03865 * 180.23946 * 5 4 3 27 27 H 0.97002 * 119.99949 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.46859 * 212.88210 * 19 10 7 29 29 H 1.09000 * 109.47492 * 332.88427 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6667 0.0041 6 6 2.2589 -1.0912 -0.0005 7 16 1.7191 -2.7685 0.0001 8 8 1.7432 -3.1974 1.3547 9 8 0.5519 -2.8148 -0.8091 10 7 2.8724 -3.6549 -0.7916 11 6 2.7839 -3.8399 -2.1455 12 1 2.0295 -3.3162 -2.7139 13 6 3.6640 -4.7003 -2.7874 14 7 4.2080 -5.6993 -2.1255 15 14 4.0762 -4.4402 -4.5908 16 1 3.3392 -3.2564 -5.1012 17 1 5.5366 -4.2145 -4.7372 18 1 3.6807 -5.6426 -5.3673 19 6 3.9872 -4.2412 -0.0434 20 6 3.6424 -5.6160 0.3538 21 7 3.3763 -6.6769 0.6610 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 4.4055 1.3709 -0.0011 26 1 4.4210 -1.2964 0.0086 27 1 4.8227 -6.3008 -2.5742 28 1 4.8779 -4.2570 -0.6716 29 1 4.1813 -3.6435 0.8472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116573063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:39 Heat of formation + Delta-G solvation = 37.548045 kcal Electronic energy + Delta-G solvation = -19023.015164 eV Core-core repulsion = 15882.748638 eV Total energy + Delta-G solvation = -3140.266525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10989 -38.49338 -38.22033 -36.97209 -36.24062 -34.27073 -33.33250 -31.43697 -29.18010 -27.74315 -25.89030 -23.17514 -22.26886 -20.47093 -19.84115 -19.12765 -18.53492 -17.65220 -16.92096 -16.39513 -16.30698 -16.16254 -15.45792 -15.13639 -14.75986 -14.61237 -14.10875 -13.76778 -13.62183 -13.54082 -13.33355 -13.19135 -13.09445 -12.91409 -12.68891 -12.49647 -12.18109 -12.05681 -11.91294 -11.75276 -11.42894 -10.75917 -10.16059 -9.74174 -8.26242 -5.84408 -0.70946 0.33963 1.41798 1.52008 1.59089 1.67985 1.71257 1.88391 2.36756 2.44804 2.59929 2.70768 3.04907 3.48753 3.66085 3.74328 4.22374 4.24651 4.28192 4.42283 4.52267 4.59214 4.84836 4.86962 5.26081 5.62843 5.64110 5.71716 6.38281 6.46913 6.90224 7.15976 7.31019 8.78451 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.008793 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.455870 B = 3183.575979 C = 3775.173978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.329 5.329 3 N -0.292 5.292 4 C 0.035 3.965 5 C -0.164 4.164 6 C -0.496 4.496 7 S 2.698 3.302 8 O -0.978 6.978 9 O -0.977 6.977 10 N -0.841 5.841 11 C -0.345 4.345 12 H 0.108 0.892 13 C 0.019 3.981 14 N -0.892 5.892 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.267 1.267 18 H -0.297 1.297 19 C 0.233 3.767 20 C 0.265 3.735 21 N -0.520 5.520 22 H 0.099 0.901 23 H 0.120 0.880 24 H 0.102 0.898 25 H 0.233 0.767 26 H 0.188 0.812 27 H 0.272 0.728 28 H 0.139 0.861 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 12.360 1.938 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.113 5.113 3 N -0.117 5.117 4 C -0.150 4.150 5 C -0.195 4.195 6 C -0.705 4.705 7 S 2.785 3.215 8 O -0.967 6.967 9 O -0.967 6.967 10 N -0.675 5.675 11 C -0.474 4.474 12 H 0.126 0.874 13 C -0.185 4.185 14 N -0.532 5.532 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.224 1.224 19 C 0.103 3.897 20 C -0.053 4.053 21 N -0.201 5.201 22 H 0.118 0.882 23 H 0.139 0.861 24 H 0.120 0.880 25 H 0.249 0.751 26 H 0.205 0.795 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.126 11.434 2.753 11.761 hybrid contribution 1.090 -0.114 -1.317 1.713 sum 0.964 11.319 1.436 11.451 Atomic orbital electron populations 1.22706 0.72561 1.07505 1.05756 1.48396 1.07175 1.01662 1.54104 1.77128 1.03291 1.09362 1.21877 1.24749 0.95713 0.95133 0.99356 1.22010 0.95403 0.96430 1.05654 1.34065 1.01945 1.16911 1.17547 1.01836 0.73649 0.73581 0.72405 1.93558 1.86793 1.80906 1.35456 1.93453 1.46547 1.86864 1.69816 1.52816 1.40622 1.57366 1.16699 1.19363 1.19066 1.28332 0.80660 0.87428 1.25538 0.96779 0.93529 1.02631 1.70004 1.31366 1.12626 1.39185 0.85298 0.78732 0.77720 0.78967 1.19095 1.19227 1.22367 1.18839 0.92294 0.81927 0.96596 1.29778 0.91714 0.95630 0.88203 1.80838 1.09679 1.13993 1.15589 0.88233 0.86121 0.87966 0.75067 0.79515 0.91754 0.84319 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.42 11.26 127.77 1.44 2.86 15 2 N -0.33 -10.56 4.01 -366.71 -1.47 -12.03 15 3 N -0.29 -8.78 12.58 -57.02 -0.72 -9.49 15 4 C 0.03 0.86 12.03 85.24 1.03 1.89 15 5 C -0.16 -4.52 10.68 21.99 0.23 -4.29 15 6 C -0.50 -16.66 6.90 83.54 0.58 -16.09 15 7 S 2.70 106.03 5.52 -56.49 -0.31 105.72 15 8 O -0.98 -40.98 17.03 -128.00 -2.18 -43.16 15 9 O -0.98 -42.58 14.67 -128.00 -1.88 -44.45 15 10 N -0.84 -34.71 2.82 -352.51 -0.99 -35.70 15 11 C -0.34 -15.71 9.37 84.03 0.79 -14.92 15 12 H 0.11 5.00 7.41 -2.91 -0.02 4.98 15 13 C 0.02 0.87 4.88 84.86 0.41 1.29 15 14 N -0.89 -42.52 9.06 21.65 0.20 -42.33 15 15 Si 0.97 37.18 29.63 68.60 2.03 39.21 15 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 17 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 18 H -0.30 -12.00 7.11 99.48 0.71 -11.29 15 19 C 0.23 8.68 5.09 84.57 0.43 9.11 15 20 C 0.26 12.08 13.34 89.44 1.19 13.28 15 21 N -0.52 -26.05 18.54 20.01 0.37 -25.68 15 22 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.12 2.45 8.14 -2.38 -0.02 2.43 15 24 H 0.10 2.91 5.82 -2.39 -0.01 2.90 15 25 H 0.23 3.37 8.06 -2.91 -0.02 3.34 15 26 H 0.19 3.98 8.06 -2.91 -0.02 3.95 15 27 H 0.27 12.59 8.31 -92.71 -0.77 11.82 15 28 H 0.14 4.96 6.45 -2.39 -0.02 4.95 15 29 H 0.13 3.61 7.69 -2.39 -0.02 3.59 15 Total: -1.00 -66.79 276.81 2.34 -64.44 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.20 Total: 10.35 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 6.10 Total: -6.88 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -2.62 Total: -125.23 kcal Atomic # 8 Polarization: -83.56 SS G_CDS: -4.06 Total: -87.61 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: 106.03 SS G_CDS: -0.31 Total: 105.72 kcal Total: -66.79 2.34 -64.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116573063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.993 kcal (2) G-P(sol) polarization free energy of solvation -66.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds