Wall clock time and date at job start Mon Mar 30 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30019 * 121.20965 * 2 1 4 4 S 1.56600 * 108.33496 * 180.02562 * 3 2 1 5 5 C 1.72067 * 95.79578 * 359.97438 * 4 3 2 6 6 C 1.47658 * 127.64721 * 179.97438 * 5 4 3 7 7 O 1.21563 * 120.00003 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99714 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72385 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 O 1.21293 * 120.00086 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00084 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00027 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99944 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99680 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47135 * 90.00298 * 17 15 13 19 19 H 1.48500 * 109.46751 * 210.00274 * 17 15 13 20 20 H 1.48499 * 109.47283 * 330.00462 * 17 15 13 21 21 N 1.30936 * 121.20833 * 180.27910 * 2 1 3 22 22 H 1.08999 * 109.47316 * 89.97211 * 1 2 3 23 23 H 1.09001 * 109.47250 * 209.97754 * 1 2 3 24 24 H 1.09003 * 109.46901 * 329.97614 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 27 27 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 28 28 H 0.97002 * 120.00050 * 359.97438 * 12 10 9 29 29 H 0.96997 * 119.99888 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1807 1.1120 0.0000 4 16 3.7073 0.7631 -0.0007 5 6 3.4953 -0.9445 -0.0002 6 6 4.5443 -1.9836 -0.0010 7 8 4.2353 -3.1593 -0.0010 8 7 5.8445 -1.6284 -0.0018 9 6 6.8853 -2.6594 0.0035 10 6 8.2421 -2.0034 0.0085 11 8 8.3309 -0.7937 0.0071 12 7 9.3568 -2.7609 0.0133 13 6 10.5911 -2.1642 0.0172 14 1 10.6701 -1.0870 0.0160 15 6 11.7404 -2.9451 0.0227 16 7 11.6442 -4.2557 0.0236 17 14 13.4221 -2.1320 0.0273 18 1 13.8628 -1.9141 1.4286 19 1 14.3980 -3.0093 -0.6677 20 1 13.3425 -0.8261 -0.6751 21 7 2.1854 -1.1199 -0.0055 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 6.0911 -0.6903 -0.0014 26 1 6.7783 -3.2793 0.8938 27 1 6.7856 -3.2811 -0.8862 28 1 9.2858 -3.7283 0.0139 29 1 12.4465 -4.8008 0.0271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117113432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:57 Heat of formation + Delta-G solvation = -14.819585 kcal Electronic energy + Delta-G solvation = -17245.161860 eV Core-core repulsion = 14102.624504 eV Total energy + Delta-G solvation = -3142.537356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19284 -39.64441 -38.19012 -34.68912 -33.87826 -33.27508 -31.47201 -30.54765 -28.64435 -25.93752 -24.33004 -21.55006 -20.52102 -19.68436 -19.52837 -18.32532 -17.73832 -16.38996 -15.97350 -15.46988 -15.32601 -14.91792 -14.44944 -14.18717 -13.99089 -13.60454 -12.98647 -12.90851 -12.36662 -12.16568 -12.12855 -12.03166 -11.68861 -11.17656 -11.01458 -10.61367 -10.50411 -10.37332 -10.10233 -9.70707 -9.42057 -9.12046 -8.74996 -8.17972 -6.58098 -4.00466 -0.18888 0.78547 1.42177 1.93682 2.57729 2.91756 3.07461 3.19238 3.24216 3.63986 3.91089 4.06215 4.51622 4.72068 4.89396 5.10093 5.10923 5.21129 5.37007 5.70141 5.72589 5.78993 5.91249 6.29868 7.05200 7.39985 7.42205 7.82538 7.98399 8.36184 8.97260 9.30374 9.77285 10.58430 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.051833 B = 0.003429 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.067231 B = 8163.342930 C = 8682.950966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.232 3.768 3 N -0.547 5.547 4 S 0.476 5.524 5 C -0.045 4.045 6 C 0.597 3.403 7 O -0.501 6.501 8 N -0.692 5.692 9 C 0.110 3.890 10 C 0.425 3.575 11 O -0.597 6.597 12 N -0.544 5.544 13 C -0.307 4.307 14 H 0.107 0.893 15 C 0.027 3.973 16 N -0.892 5.892 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 N -0.424 5.424 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.411 0.589 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.397 0.603 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 6.485 -0.030 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 N -0.388 5.388 4 S 0.618 5.382 5 C -0.331 4.331 6 C 0.377 3.623 7 O -0.374 6.374 8 N -0.348 5.348 9 C -0.017 4.017 10 C 0.210 3.790 11 O -0.484 6.484 12 N -0.179 5.179 13 C -0.436 4.436 14 H 0.125 0.875 15 C -0.176 4.176 16 N -0.532 5.532 17 Si 0.761 3.239 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 N -0.147 5.147 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.250 0.750 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.231 0.769 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.819 7.354 -0.045 16.544 hybrid contribution 0.291 -0.686 0.002 0.745 sum -14.528 6.668 -0.043 15.985 Atomic orbital electron populations 1.20360 0.83338 1.04455 1.04189 1.23645 1.01149 0.80906 0.99942 1.73295 1.06658 1.31927 1.26927 1.81685 1.05430 0.98871 1.52253 1.29150 0.95358 1.02395 1.06235 1.16351 0.81044 0.86327 0.78609 1.90844 1.81596 1.16919 1.48067 1.45435 1.03723 1.12153 1.73499 1.21101 0.86428 0.90045 1.04105 1.19600 0.85196 0.87917 0.86254 1.90507 1.86396 1.13827 1.57621 1.41778 1.04741 1.09231 1.62134 1.19746 0.81248 0.94145 1.48467 0.87520 1.25346 1.00362 0.95330 0.96580 1.69609 1.30912 1.03818 1.48862 0.85796 0.80612 0.78988 0.78543 1.20218 1.20770 1.19259 1.68530 1.03193 1.27942 1.15039 0.89500 0.89163 0.89521 0.74982 0.88987 0.88977 0.76938 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.42 36.00 0.38 -0.12 15 2 C 0.23 2.84 7.51 -159.43 -1.20 1.64 15 3 N -0.55 -6.70 11.42 21.17 0.24 -6.45 15 4 S 0.48 5.38 22.59 -107.50 -2.43 2.95 15 5 C -0.04 -0.63 7.57 -13.57 -0.10 -0.74 15 6 C 0.60 9.53 7.82 -12.41 -0.10 9.43 15 7 O -0.50 -9.49 17.11 5.31 0.09 -9.40 15 8 N -0.69 -10.77 5.52 -62.49 -0.35 -11.12 15 9 C 0.11 1.85 6.15 -5.19 -0.03 1.82 15 10 C 0.42 9.08 7.85 -10.98 -0.09 9.00 15 11 O -0.60 -14.25 15.24 5.55 0.08 -14.17 15 12 N -0.54 -12.78 5.29 -10.96 -0.06 -12.83 15 13 C -0.31 -7.98 9.68 -14.93 -0.14 -8.13 15 14 H 0.11 2.89 7.16 -52.49 -0.38 2.51 15 15 C 0.03 0.69 5.50 -17.47 -0.10 0.59 15 16 N -0.89 -23.02 13.05 55.50 0.72 -22.29 15 17 Si 0.93 19.85 29.55 -169.99 -5.02 14.82 15 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 20 H -0.27 -5.68 7.11 56.52 0.40 -5.27 15 21 N -0.42 -6.17 10.84 -22.01 -0.24 -6.41 15 22 H 0.09 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.09 0.58 8.14 -51.93 -0.42 0.15 15 25 H 0.41 6.10 6.75 -40.82 -0.28 5.83 15 26 H 0.09 1.45 8.14 -51.92 -0.42 1.03 15 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 28 H 0.40 8.92 7.90 -40.82 -0.32 8.60 15 29 H 0.28 6.72 8.31 -40.82 -0.34 6.38 15 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -31.12 285.26 -6.26 -37.38 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -2.22 Total: 9.73 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: -1.38 Total: 13.50 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.32 Total: -59.11 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.18 Total: -23.56 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -2.43 Total: 2.95 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.12 -6.26 -37.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117113432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.561 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds