Wall clock time and date at job start Mon Mar 30 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30019 * 121.20965 * 2 1 4 4 S 1.56600 * 108.33496 * 180.02562 * 3 2 1 5 5 C 1.72067 * 95.79578 * 359.97438 * 4 3 2 6 6 C 1.47658 * 127.64721 * 179.97438 * 5 4 3 7 7 O 1.21563 * 120.00003 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99714 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72385 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 O 1.21293 * 120.00086 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00084 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00027 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99944 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99680 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47135 * 90.00298 * 17 15 13 19 19 H 1.48500 * 109.46751 * 210.00274 * 17 15 13 20 20 H 1.48499 * 109.47283 * 330.00462 * 17 15 13 21 21 N 1.30936 * 121.20833 * 180.27910 * 2 1 3 22 22 H 1.08999 * 109.47316 * 89.97211 * 1 2 3 23 23 H 1.09001 * 109.47250 * 209.97754 * 1 2 3 24 24 H 1.09003 * 109.46901 * 329.97614 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 27 27 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 28 28 H 0.97002 * 120.00050 * 359.97438 * 12 10 9 29 29 H 0.96997 * 119.99888 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1807 1.1120 0.0000 4 16 3.7073 0.7631 -0.0007 5 6 3.4953 -0.9445 -0.0002 6 6 4.5443 -1.9836 -0.0010 7 8 4.2353 -3.1593 -0.0010 8 7 5.8445 -1.6284 -0.0018 9 6 6.8853 -2.6594 0.0035 10 6 8.2421 -2.0034 0.0085 11 8 8.3309 -0.7937 0.0071 12 7 9.3568 -2.7609 0.0133 13 6 10.5911 -2.1642 0.0172 14 1 10.6701 -1.0870 0.0160 15 6 11.7404 -2.9451 0.0227 16 7 11.6442 -4.2557 0.0236 17 14 13.4221 -2.1320 0.0273 18 1 13.8628 -1.9141 1.4286 19 1 14.3980 -3.0093 -0.6677 20 1 13.3425 -0.8261 -0.6751 21 7 2.1854 -1.1199 -0.0055 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 6.0911 -0.6903 -0.0014 26 1 6.7783 -3.2793 0.8938 27 1 6.7856 -3.2811 -0.8862 28 1 9.2858 -3.7283 0.0139 29 1 12.4465 -4.8008 0.0271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117113432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:56 Heat of formation + Delta-G solvation = -39.704562 kcal Electronic energy + Delta-G solvation = -17246.240953 eV Core-core repulsion = 14102.624504 eV Total energy + Delta-G solvation = -3143.616450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19005 -41.01991 -39.86872 -36.31760 -35.51153 -34.28022 -33.35872 -31.31544 -30.03524 -27.35898 -25.90405 -22.62475 -21.71070 -21.27725 -20.53738 -20.08431 -19.13729 -17.49801 -17.45107 -17.00584 -16.62909 -16.53046 -15.92784 -15.49430 -15.43675 -15.06353 -14.04396 -13.77163 -13.58785 -13.54350 -13.52512 -13.10219 -12.93635 -12.89176 -12.42452 -12.10828 -12.05501 -11.77851 -11.54581 -11.22825 -10.56235 -10.53662 -10.25229 -10.07297 -8.48912 -5.98652 -1.23011 -0.20234 0.49607 0.92717 1.35215 1.38753 1.47267 1.58934 1.73517 1.92267 2.30346 2.91971 3.09278 3.18849 3.40863 4.05308 4.18911 4.25620 4.39874 4.41745 4.65720 4.69161 4.92464 5.10966 5.41491 5.92836 5.98567 6.28081 6.49286 6.71334 7.05836 7.45710 7.95314 8.67652 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.051833 B = 0.003429 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.067231 B = 8163.342930 C = 8682.950966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.227 3.773 3 N -0.557 5.557 4 S 0.539 5.461 5 C -0.076 4.076 6 C 0.605 3.395 7 O -0.535 6.535 8 N -0.688 5.688 9 C 0.121 3.879 10 C 0.433 3.567 11 O -0.621 6.621 12 N -0.557 5.557 13 C -0.335 4.335 14 H 0.089 0.911 15 C -0.010 4.010 16 N -0.915 5.915 17 Si 0.996 3.004 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.269 1.269 21 N -0.448 5.448 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.416 0.584 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.400 0.600 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 7.370 -0.039 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 N -0.399 5.399 4 S 0.681 5.319 5 C -0.361 4.361 6 C 0.386 3.614 7 O -0.411 6.411 8 N -0.344 5.344 9 C -0.006 4.006 10 C 0.220 3.780 11 O -0.509 6.509 12 N -0.192 5.192 13 C -0.465 4.465 14 H 0.107 0.893 15 C -0.210 4.210 16 N -0.555 5.555 17 Si 0.819 3.181 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.194 1.194 21 N -0.172 5.172 22 H 0.120 0.880 23 H 0.115 0.885 24 H 0.121 0.879 25 H 0.255 0.745 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.234 0.766 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.379 8.240 -0.053 17.447 hybrid contribution 0.372 -0.849 0.004 0.927 sum -15.006 7.391 -0.049 16.727 Atomic orbital electron populations 1.20566 0.80724 1.05568 1.05504 1.24190 1.02624 0.80189 0.99104 1.73284 1.07345 1.32174 1.27135 1.81458 1.04657 0.95916 1.49880 1.28807 0.95148 1.03618 1.08482 1.16456 0.81129 0.86290 0.77486 1.90820 1.82102 1.18465 1.49703 1.45352 1.03533 1.12059 1.73444 1.20979 0.83920 0.90079 1.05648 1.20270 0.86283 0.87574 0.83904 1.90488 1.87206 1.15149 1.58027 1.41817 1.04743 1.09471 1.63195 1.19751 0.82828 0.93652 1.50243 0.89287 1.26099 1.03276 0.95842 0.95822 1.69673 1.31920 1.04666 1.49247 0.84883 0.76563 0.78017 0.78633 1.19683 1.19927 1.19364 1.68564 1.03539 1.29461 1.15665 0.87982 0.88501 0.87922 0.74476 0.87432 0.87421 0.76571 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.42 71.23 0.74 -0.13 15 2 C 0.23 5.16 7.51 139.53 1.05 6.21 15 3 N -0.56 -12.53 11.42 -86.95 -0.99 -13.52 15 4 S 0.54 11.27 22.59 -56.49 -1.28 9.99 15 5 C -0.08 -2.09 7.57 87.13 0.66 -1.43 15 6 C 0.60 18.91 7.82 86.73 0.68 19.59 15 7 O -0.54 -20.10 17.11 -3.91 -0.07 -20.17 15 8 N -0.69 -20.76 5.52 -469.89 -2.60 -23.36 15 9 C 0.12 3.94 6.15 85.63 0.53 4.47 15 10 C 0.43 18.37 7.85 87.66 0.69 19.06 15 11 O -0.62 -29.53 15.24 -3.07 -0.05 -29.58 15 12 N -0.56 -26.25 5.29 -306.98 -1.62 -27.87 15 13 C -0.34 -17.61 9.68 84.04 0.81 -16.79 15 14 H 0.09 4.90 7.16 -2.91 -0.02 4.88 15 15 C -0.01 -0.48 5.50 84.93 0.47 -0.01 15 16 N -0.92 -47.01 13.05 21.66 0.28 -46.73 15 17 Si 1.00 40.33 29.55 68.60 2.03 42.36 15 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 19 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 21 N -0.45 -12.61 10.84 -223.54 -2.42 -15.04 15 22 H 0.10 1.13 8.14 -2.39 -0.02 1.11 15 23 H 0.10 1.23 8.14 -2.39 -0.02 1.21 15 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.42 11.90 6.75 -92.71 -0.63 11.28 15 26 H 0.11 3.26 8.14 -2.38 -0.02 3.24 15 27 H 0.11 3.26 8.14 -2.39 -0.02 3.24 15 28 H 0.40 18.07 7.90 -92.71 -0.73 17.34 15 29 H 0.28 13.49 8.31 -92.71 -0.77 12.72 15 Total: -1.00 -65.74 285.26 -1.21 -66.96 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.13 Total: 25.97 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 5.62 Total: 30.97 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -7.35 Total: -126.51 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.11 Total: -49.75 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 11.27 SS G_CDS: -1.28 Total: 9.99 kcal Total: -65.74 -1.21 -66.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117113432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.254 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds