Wall clock time and date at job start Mon Mar 30 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.39673 * 119.99605 * 180.02562 * 11 10 9 13 13 C 1.38914 * 120.07707 * 359.72057 * 12 11 10 14 14 C 1.38106 * 119.92380 * 179.76726 * 13 12 11 15 15 C 1.38287 * 120.07267 * 0.51577 * 14 13 12 16 16 S 1.76204 * 119.92339 * 179.72053 * 15 14 13 17 17 N 1.65601 * 107.21759 * 270.02084 * 16 15 14 18 18 O 1.42103 * 106.40132 * 23.56194 * 16 15 14 19 19 O 1.42101 * 106.40288 * 156.48187 * 16 15 14 20 20 C 1.38283 * 120.15072 * 359.74237 * 15 14 13 21 21 C 1.38101 * 120.07597 * 359.97438 * 20 15 14 22 22 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 24 24 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 25 25 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 26 26 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 27 27 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 28 28 H 1.07998 * 120.03713 * 0.02562 * 13 12 11 29 29 H 1.07994 * 119.96460 * 180.25714 * 14 13 12 30 30 H 0.96995 * 119.99865 * 150.00281 * 17 16 15 31 31 H 0.97004 * 119.99827 * 330.00170 * 17 16 15 32 32 H 1.08009 * 119.96048 * 180.02562 * 20 15 14 33 33 H 1.08005 * 120.03673 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.2111 -6.1404 -0.0037 13 6 3.6002 -6.1422 -0.0095 14 6 4.2876 -7.3401 -0.0050 15 6 3.5946 -8.5368 -0.0056 16 16 4.4756 -10.0627 -0.0073 17 7 4.7202 -10.4857 -1.5896 18 8 5.7587 -9.7859 0.5371 19 8 3.5941 -11.0356 0.5364 20 6 2.2118 -8.5385 -0.0052 21 6 1.5181 -7.3444 -0.0038 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6240 -2.5576 0.8880 25 1 2.8719 -3.6051 0.8873 26 1 2.8719 -3.6036 -0.8927 27 1 0.5427 -4.9308 -0.0033 28 1 4.1420 -5.2080 -0.0133 29 1 5.3676 -7.3422 -0.0053 30 1 5.5031 -11.0016 -1.8382 31 1 4.0806 -10.2175 -2.2678 32 1 1.6736 -9.4750 -0.0052 33 1 0.4381 -7.3465 -0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120832644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:14 Heat of formation + Delta-G solvation = -90.481342 kcal Electronic energy + Delta-G solvation = -17590.806629 eV Core-core repulsion = 14548.528676 eV Total energy + Delta-G solvation = -3042.277953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47141 -38.11860 -37.26319 -36.79666 -35.11582 -33.93350 -32.46407 -31.89530 -29.65893 -26.59116 -24.26851 -23.38206 -22.24036 -20.41102 -19.24521 -18.77910 -18.21246 -18.04723 -17.06893 -16.93771 -16.48605 -15.95233 -15.92482 -15.46420 -14.88962 -14.44672 -14.34600 -14.16806 -13.91718 -13.28210 -13.12640 -13.08912 -13.00326 -12.98397 -12.53308 -12.44928 -12.05743 -11.85817 -11.60315 -11.42581 -11.28900 -11.18547 -10.60331 -10.02464 -8.68351 -8.26994 -6.38288 -0.40822 0.10779 0.42687 1.41107 1.42946 1.50905 2.29004 2.34758 2.50237 2.60571 2.94488 3.08455 3.60226 3.90693 3.97914 4.32452 4.36824 4.46595 4.53627 4.68554 4.82490 4.96081 5.08290 5.22266 5.27705 5.35683 5.36462 5.53474 5.68146 5.81439 6.07251 6.25864 6.44902 6.67423 6.78180 7.32011 8.84928 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049360 B = 0.003111 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.128188 B = 8997.574660 C = 9370.869906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.020 3.980 10 C 0.139 3.861 11 N -0.729 5.729 12 C 0.260 3.740 13 C -0.236 4.236 14 C 0.026 3.974 15 C -0.745 4.745 16 S 2.738 3.262 17 N -1.235 6.235 18 O -1.002 7.002 19 O -1.000 7.000 20 C 0.022 3.978 21 C -0.227 4.227 22 H 0.265 0.735 23 H 0.002 0.998 24 H 0.000 1.000 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.406 0.594 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.428 0.572 31 H 0.428 0.572 32 H 0.158 0.842 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 -19.017 -4.473 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.017 4.017 10 C 0.015 3.985 11 N -0.352 5.352 12 C 0.150 3.850 13 C -0.260 4.260 14 C 0.005 3.995 15 C -0.837 4.837 16 S 2.828 3.172 17 N -0.913 5.913 18 O -0.992 6.992 19 O -0.990 6.990 20 C 0.002 3.998 21 C -0.250 4.250 22 H 0.074 0.926 23 H 0.021 0.979 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.241 0.759 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.260 0.740 31 H 0.258 0.742 32 H 0.176 0.824 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.309 -19.109 -3.541 20.764 hybrid contribution -0.673 1.783 -0.573 1.991 sum 6.636 -17.326 -4.114 19.004 Atomic orbital electron populations 1.70064 1.07778 1.28095 1.51031 1.25925 0.95740 1.03354 0.94425 0.85478 0.78244 0.77954 0.79274 1.19024 1.21022 1.19194 1.21465 0.93808 0.91673 1.51486 0.91558 1.19112 0.94467 0.92325 0.95828 1.21398 0.95162 0.81703 1.00235 1.45328 1.09155 1.03149 1.77565 1.18521 0.92293 0.86500 0.87667 1.20955 0.92518 0.99591 1.12933 1.20784 1.00343 0.90286 0.88048 1.30137 1.06053 1.18591 1.28933 1.00086 0.72030 0.72616 0.72489 1.52784 1.38269 1.72510 1.27742 1.93530 1.41886 1.85772 1.78034 1.93550 1.67993 1.59630 1.77778 1.20869 0.91846 0.98831 0.88295 1.20941 1.00959 0.90610 1.12499 0.92607 0.97928 0.98121 0.92697 0.92334 0.75890 0.85202 0.83197 0.73976 0.74204 0.82408 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.55 -29.08 9.11 25.60 0.23 -28.85 16 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C 0.14 5.21 4.85 86.38 0.42 5.63 16 11 N -0.73 -23.06 5.73 -339.39 -1.95 -25.00 16 12 C 0.26 7.39 6.65 38.22 0.25 7.65 16 13 C -0.24 -6.49 9.31 22.40 0.21 -6.29 16 14 C 0.03 0.61 9.51 22.25 0.21 0.82 16 15 C -0.75 -16.15 5.98 22.29 0.13 -16.01 16 16 S 2.74 52.52 6.28 -56.49 -0.35 52.17 16 17 N -1.23 -12.62 9.52 37.02 0.35 -12.27 16 18 O -1.00 -25.65 17.28 -128.00 -2.21 -27.86 16 19 O -1.00 -25.11 17.28 -128.00 -2.21 -27.33 16 20 C 0.02 0.47 9.51 22.25 0.21 0.68 16 21 C -0.23 -5.40 9.90 22.40 0.22 -5.18 16 22 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 23 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 24 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.05 2.06 7.96 -2.38 -0.02 2.04 16 26 H 0.06 2.15 7.94 -2.39 -0.02 2.13 16 27 H 0.41 12.10 8.49 -92.71 -0.79 11.32 16 28 H 0.13 3.56 6.73 -2.91 -0.02 3.54 16 29 H 0.15 3.05 7.61 -2.91 -0.02 3.03 16 30 H 0.43 2.84 8.96 -96.75 -0.87 1.97 16 31 H 0.43 2.57 8.96 -96.74 -0.87 1.70 16 32 H 0.16 2.61 7.61 -2.91 -0.02 2.59 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -70.75 300.26 -2.91 -73.66 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -1.36 Total: 15.85 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 2.51 Total: -39.74 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -1.31 Total: -91.00 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -4.42 Total: -55.19 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 52.52 SS G_CDS: -0.35 Total: 52.17 kcal Total: -70.75 -2.91 -73.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120832644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.817 kcal (2) G-P(sol) polarization free energy of solvation -70.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds