Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48503 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47196 * 300.00474 * 3 2 1 6 6 H 1.48503 * 109.47243 * 60.00335 * 3 2 1 7 7 C 1.37880 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00527 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99519 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46967 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46973 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 179.97438 * 11 10 9 14 14 N 1.40105 * 119.99873 * 180.02562 * 13 11 10 15 15 C 1.34773 * 119.99844 * 179.73003 * 14 13 11 16 16 O 1.21568 * 120.00576 * 359.97438 * 15 14 13 17 17 C 1.47756 * 120.00086 * 180.02562 * 15 14 13 18 18 C 1.39349 * 124.11639 * 179.72551 * 17 15 14 19 19 N 1.30101 * 112.14126 * 179.78113 * 18 17 15 20 20 S 1.55918 * 108.75516 * 0.46269 * 19 18 17 21 21 N 1.31490 * 124.11335 * 0.02562 * 17 15 14 22 22 H 0.97008 * 120.00194 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46844 * 60.00281 * 9 7 2 24 24 H 1.09002 * 109.47152 * 299.99745 * 9 7 2 25 25 H 1.09000 * 109.46986 * 59.99914 * 10 9 7 26 26 H 1.09002 * 109.46857 * 299.99780 * 10 9 7 27 27 H 0.97005 * 120.00189 * 0.02562 * 13 11 10 28 28 H 0.96996 * 120.00240 * 0.02562 * 14 13 11 29 29 H 1.07998 * 123.93217 * 359.97357 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9671 0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1343 -0.0003 14 7 1.4649 -7.3477 -0.0003 15 6 2.1388 -8.5148 -0.0062 16 8 3.3544 -8.5149 -0.0120 17 6 1.4000 -9.7944 -0.0067 18 6 2.0083 -11.0481 -0.0181 19 7 1.1382 -12.0154 -0.0113 20 16 -0.2946 -11.4007 -0.0045 21 7 0.0885 -9.8888 -0.0022 22 1 -0.4851 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6043 0.8894 26 1 2.8717 -3.6044 -0.8906 27 1 3.1355 -6.1344 -0.0006 28 1 0.4949 -7.3477 -0.0003 29 1 3.0776 -11.1993 -0.0280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133403044.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = 14.499858 kcal Electronic energy + Delta-G solvation = -17139.186059 eV Core-core repulsion = 13997.920090 eV Total energy + Delta-G solvation = -3141.265970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.54030 -39.94893 -38.63154 -35.40410 -34.09495 -33.56790 -31.74955 -30.51108 -27.80924 -25.77458 -23.67874 -21.97822 -21.30970 -19.98931 -19.86748 -18.05073 -17.65219 -16.72078 -16.53781 -15.90923 -15.41730 -15.38814 -14.68929 -14.56871 -14.46533 -13.52619 -12.68930 -12.67518 -12.26569 -11.89207 -11.66117 -11.47171 -11.26958 -11.25900 -10.97618 -10.69714 -10.59884 -10.06872 -9.83264 -9.67352 -9.46975 -9.14879 -8.40808 -8.33049 -6.01519 -4.06327 -0.02378 0.92381 1.09930 1.16373 1.80103 2.61153 3.03993 3.30558 3.38033 3.41200 3.73917 4.15092 4.42192 4.55415 4.66019 5.05095 5.29922 5.34105 5.91548 6.07219 6.07825 6.55055 6.62441 6.80658 7.56243 7.67685 7.73966 7.75477 7.99129 8.30072 8.53804 9.01554 9.57870 11.09384 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.058972 B = 0.002927 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.685899 B = 9564.169252 C =10018.399849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.528 6.528 13 N -0.534 5.534 14 N -0.498 5.498 15 C 0.601 3.399 16 O -0.528 6.528 17 C 0.019 3.981 18 C 0.095 3.905 19 N -0.579 5.579 20 S 0.735 5.265 21 N -0.547 5.547 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.431 0.569 28 H 0.439 0.561 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -23.448 -0.022 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.159 4.159 11 C 0.302 3.698 12 O -0.401 6.401 13 N -0.287 5.287 14 N -0.243 5.243 15 C 0.381 3.619 16 O -0.403 6.403 17 C -0.157 4.157 18 C -0.098 4.098 19 N -0.420 5.420 20 S 0.776 5.224 21 N -0.398 5.398 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.273 0.727 28 H 0.283 0.717 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.191 -24.248 -0.014 24.249 hybrid contribution 2.015 1.630 -0.005 2.591 sum 2.206 -22.619 -0.019 22.726 Atomic orbital electron populations 1.70002 1.06090 1.26611 1.50042 1.25021 0.94837 0.99320 0.95166 0.86505 0.80024 0.83657 0.77598 1.19668 1.21002 1.21008 1.21220 0.93077 0.90751 1.51635 0.92312 1.18961 0.93124 0.89094 0.98936 1.21922 1.00932 0.89547 1.03497 1.22209 0.89212 0.83863 0.74534 1.90711 1.14165 1.86750 1.48434 1.45674 1.08979 0.95251 1.78759 1.44561 1.09794 0.97227 1.72752 1.16603 0.86283 0.80600 0.78440 1.90856 1.11845 1.86188 1.51415 1.22153 0.87516 0.96948 1.09065 1.23735 1.02907 0.84883 0.98313 1.72285 1.08238 1.37718 1.23748 1.79143 1.10835 0.85855 1.46563 1.72457 1.18209 1.28564 1.20530 0.92928 0.95552 0.95561 0.89298 0.89290 0.72715 0.71700 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 7 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.04 0.94 4.26 -27.88 -0.12 0.82 15 10 C -0.12 -2.23 5.64 -27.89 -0.16 -2.38 15 11 C 0.51 9.36 7.95 -10.99 -0.09 9.27 15 12 O -0.53 -11.66 15.82 5.56 0.09 -11.57 15 13 N -0.53 -7.81 6.26 31.22 0.20 -7.62 15 14 N -0.50 -6.87 6.26 30.51 0.19 -6.67 15 15 C 0.60 7.53 7.94 -12.37 -0.10 7.43 15 16 O -0.53 -7.36 16.64 5.31 0.09 -7.27 15 17 C 0.02 0.20 6.81 -83.71 -0.57 -0.37 15 18 C 0.10 0.82 11.22 -17.87 -0.20 0.62 15 19 N -0.58 -4.96 11.41 19.43 0.22 -4.74 15 20 S 0.73 5.10 23.69 -107.50 -2.55 2.55 15 21 N -0.55 -5.43 11.00 23.18 0.26 -5.18 15 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 15 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 15 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 27 H 0.43 5.38 8.00 -182.59 -1.46 3.92 15 28 H 0.44 6.18 7.59 -182.60 -1.39 4.79 15 29 H 0.22 1.41 8.06 -52.49 -0.42 0.99 15 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -34.08 285.79 -7.62 -41.71 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.50 Total: 2.20 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.64 Total: 2.13 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 1.60 Total: -50.28 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -2.55 Total: 2.55 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.08 -7.62 -41.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133403044.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.208 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds