Wall clock time and date at job start Mon Mar 30 2020 00:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48503 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47196 * 300.00474 * 3 2 1 6 6 H 1.48503 * 109.47243 * 60.00335 * 3 2 1 7 7 C 1.37880 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00527 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99519 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46967 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46973 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 179.97438 * 11 10 9 14 14 N 1.40105 * 119.99873 * 180.02562 * 13 11 10 15 15 C 1.34773 * 119.99844 * 179.73003 * 14 13 11 16 16 O 1.21568 * 120.00576 * 359.97438 * 15 14 13 17 17 C 1.47756 * 120.00086 * 180.02562 * 15 14 13 18 18 C 1.39349 * 124.11639 * 179.72551 * 17 15 14 19 19 N 1.30101 * 112.14126 * 179.78113 * 18 17 15 20 20 S 1.55918 * 108.75516 * 0.46269 * 19 18 17 21 21 N 1.31490 * 124.11335 * 0.02562 * 17 15 14 22 22 H 0.97008 * 120.00194 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46844 * 60.00281 * 9 7 2 24 24 H 1.09002 * 109.47152 * 299.99745 * 9 7 2 25 25 H 1.09000 * 109.46986 * 59.99914 * 10 9 7 26 26 H 1.09002 * 109.46857 * 299.99780 * 10 9 7 27 27 H 0.97005 * 120.00189 * 0.02562 * 13 11 10 28 28 H 0.96996 * 120.00240 * 0.02562 * 14 13 11 29 29 H 1.07998 * 123.93217 * 359.97357 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9671 0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1343 -0.0003 14 7 1.4649 -7.3477 -0.0003 15 6 2.1388 -8.5148 -0.0062 16 8 3.3544 -8.5149 -0.0120 17 6 1.4000 -9.7944 -0.0067 18 6 2.0083 -11.0481 -0.0181 19 7 1.1382 -12.0154 -0.0113 20 16 -0.2946 -11.4007 -0.0045 21 7 0.0885 -9.8888 -0.0022 22 1 -0.4851 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6043 0.8894 26 1 2.8717 -3.6044 -0.8906 27 1 3.1355 -6.1344 -0.0006 28 1 0.4949 -7.3477 -0.0003 29 1 3.0776 -11.1993 -0.0280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133403044.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:32 Heat of formation + Delta-G solvation = -13.026095 kcal Electronic energy + Delta-G solvation = -17140.379674 eV Core-core repulsion = 13997.920090 eV Total energy + Delta-G solvation = -3142.459584 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.33700 -41.15975 -39.85347 -36.64136 -35.56516 -34.85452 -33.36592 -32.03941 -28.70997 -27.57181 -24.73615 -23.58969 -22.44613 -21.28326 -20.55242 -19.30365 -18.79266 -18.47023 -17.36908 -17.25840 -16.71297 -16.45326 -16.38463 -15.72774 -15.69281 -15.08000 -14.35436 -14.24012 -13.35011 -13.25411 -12.86285 -12.62746 -12.58210 -12.44778 -12.33643 -12.15485 -11.93342 -11.67622 -11.62724 -11.29582 -11.03269 -10.55525 -10.32967 -9.56615 -8.16656 -6.29763 -0.75120 0.22255 0.33991 0.50111 0.75052 1.41966 1.45655 1.45924 1.59403 1.86337 2.44004 2.77720 3.17519 3.32583 3.47744 3.94344 3.95832 4.46235 4.47034 4.54140 5.02099 5.19748 5.37801 5.52842 5.61295 5.63838 5.86783 6.18002 6.36311 6.60570 6.89069 7.20851 7.40514 8.96052 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.058972 B = 0.002927 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.685899 B = 9564.169252 C =10018.399849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.040 3.960 10 C -0.107 4.107 11 C 0.519 3.481 12 O -0.575 6.575 13 N -0.516 5.516 14 N -0.506 5.506 15 C 0.609 3.391 16 O -0.541 6.541 17 C 0.000 4.000 18 C 0.101 3.899 19 N -0.597 5.597 20 S 0.814 5.186 21 N -0.575 5.575 22 H 0.262 0.738 23 H -0.012 1.012 24 H -0.012 1.012 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.443 0.557 28 H 0.438 0.562 29 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -24.541 -0.025 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.176 1.176 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.148 4.148 11 C 0.308 3.692 12 O -0.452 6.452 13 N -0.268 5.268 14 N -0.252 5.252 15 C 0.390 3.610 16 O -0.417 6.417 17 C -0.174 4.174 18 C -0.091 4.091 19 N -0.439 5.439 20 S 0.855 5.145 21 N -0.428 5.428 22 H 0.071 0.929 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.288 0.712 28 H 0.281 0.719 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.035 -25.387 -0.016 25.468 hybrid contribution 1.368 1.773 -0.005 2.239 sum 3.404 -23.614 -0.021 23.858 Atomic orbital electron populations 1.70171 1.08241 1.27700 1.51598 1.26088 0.95683 1.03825 0.94735 0.85294 0.79396 0.78279 0.77391 1.17569 1.20833 1.20844 1.21738 0.94176 0.91408 1.50549 0.90296 1.18742 0.93717 0.92006 0.95295 1.21659 0.99440 0.87549 1.06132 1.21869 0.88350 0.84720 0.74242 1.90699 1.16062 1.87434 1.50964 1.45200 1.09376 0.95231 1.76980 1.44705 1.09791 0.96912 1.73758 1.16864 0.86185 0.80759 0.77178 1.90841 1.12494 1.86540 1.51857 1.21841 0.87706 0.96312 1.11560 1.23862 1.03676 0.84067 0.97486 1.72236 1.09181 1.38033 1.24400 1.78872 1.09131 0.83357 1.43155 1.72268 1.18349 1.31132 1.21054 0.92912 0.99379 0.99386 0.86576 0.86568 0.71185 0.71904 0.75044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.29 21.45 0.28 -57.89 15 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 15 3 Si 0.97 43.44 29.54 68.60 2.03 45.46 15 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 7 C -0.54 -29.65 9.11 25.60 0.23 -29.42 15 8 H 0.08 3.92 7.74 -2.92 -0.02 3.89 15 9 C 0.04 2.13 4.26 29.85 0.13 2.26 15 10 C -0.11 -3.96 5.64 29.85 0.17 -3.79 15 11 C 0.52 18.95 7.95 87.66 0.70 19.65 15 12 O -0.57 -26.29 15.82 -3.01 -0.05 -26.34 15 13 N -0.52 -14.64 6.26 -173.54 -1.09 -15.72 15 14 N -0.51 -13.70 6.26 -175.66 -1.10 -14.80 15 15 C 0.61 14.66 7.94 86.76 0.69 15.35 15 16 O -0.54 -14.35 16.64 -3.93 -0.07 -14.41 15 17 C 0.00 -0.01 6.81 41.98 0.29 0.28 15 18 C 0.10 1.56 11.22 85.22 0.96 2.52 15 19 N -0.60 -8.91 11.41 -92.43 -1.05 -9.97 15 20 S 0.81 9.55 23.69 -56.49 -1.34 8.21 15 21 N -0.58 -10.68 11.00 -80.58 -0.89 -11.57 15 22 H 0.26 15.26 8.31 -92.70 -0.77 14.49 15 23 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 15 24 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 15 25 H 0.12 3.68 8.14 -2.39 -0.02 3.66 15 26 H 0.12 3.69 8.14 -2.39 -0.02 3.67 15 27 H 0.44 10.27 8.00 -213.31 -1.71 8.57 15 28 H 0.44 12.38 7.59 -213.32 -1.62 10.76 15 29 H 0.23 2.58 8.06 -2.91 -0.02 2.56 15 Total: -1.00 -75.37 285.79 -1.75 -77.12 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -2.10 Total: 12.93 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 3.62 Total: 6.97 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.84 Total: -109.94 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.11 Total: -40.75 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 9.55 SS G_CDS: -1.34 Total: 8.21 kcal Total: -75.37 -1.75 -77.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133403044.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.090 kcal (2) G-P(sol) polarization free energy of solvation -75.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds